Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00012 ATGTACGGTGGAACAGTAGCGGGCATCCAGGGGCAACCTCTAGAGATTACTGTGGTTTCTTGCTCGAAATTGAAGGACACAGAATGGATTTCAAGACAAGATCCGTACGTTTGCCTTGAATACGCCACCACTAAATTCCGAACAAGAACCTGCACAGACGGCGGTAAGAACCCCGTATTTCAAGAGAAGTTCGTGTTTCCCCTCATTGAAGGTCTTCGCGAACTCAATGTCGTCGTTTGGAACAGCAATACCGTCACCTTCGATGATTTTATCGGCACCGGAAGGGTTCAATTGCAGAAGGTTCTTTCTCAAGGTTTTGATGACTCTGCTTGGCCACTTCAAACTAAAACTGGCAGATACGCAGGCGAAGTAAAACTAATACTGCATTATGCCAATGCTCAGAAATCAAGCTCAAGCCATACTCCCTATATGTCAACAACACCAACAGTACCATTATATAATTCTGCTCCTTCCTACTACCCACAACAACAACAACAGCCACACTCTAATTCAGCTCCTTATTACCATCCACCACCCTCTGCCGCTTACCCACCATCACCGTACCCTGCTGCTGCTGCTGCTTCACATTCATCTCCCTATCCACCACCCTCATCATATGCATACCCTCCATCAGTATCATCTCCCTATCCACCACCCTCATCATCACCATCGCCATACCCTCCTCCCCACTCCTATCTGCCATCATCAGCTTATCCGCCATCTTCATACCCTCCACCTGCAGGTTATCCTCCAAACGCTGCTGGAATATACCCTCCACCGCCATACTGA 789 0.4791 MYGGTVAGIQGQPLEITVVSCSKLKDTEWISRQDPYVCLEYATTKFRTRTCTDGGKNPVFQEKFVFPLIEGLRELNVVVWNSNTVTFDDFIGTGRVQLQKVLSQGFDDSAWPLQTKTGRYAGEVKLILHYANAQKSSSSHTPYMSTTPTVPLYNSAPSYYPQQQQQPHSNSAPYYHPPPSAAYPPSPYPAAAAASHSSPYPPPSSYAYPPSVSSPYPPPSSSPSPYPPPHSYLPSSAYPPSSYPPPAGYPPNAAGIYPPPPY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00012 262 Pfam C2 domain 14 104 IPR000008 -
Trre9g00012 262 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 7 260 - -
Trre9g00012 262 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Trre9g00012 262 MobiDBLite consensus disorder prediction 154 171 - -
Trre9g00012 262 CDD C2 14 111 - -
Trre9g00012 262 MobiDBLite consensus disorder prediction 202 231 - -
Trre9g00012 262 Gene3D C2 domain 12 132 IPR035892 -
Trre9g00012 262 SMART C2_3c 13 110 IPR000008 -
Trre9g00012 262 MobiDBLite consensus disorder prediction 172 186 - -
Trre9g00012 262 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 132 IPR035892 -
Trre9g00012 262 PRINTS Proline rich extensin signature 173 189 - -
Trre9g00012 262 PRINTS Proline rich extensin signature 218 239 - -
Trre9g00012 262 PRINTS Proline rich extensin signature 203 215 - -
Trre9g00012 262 PRINTS Proline rich extensin signature 155 167 - -
Trre9g00012 262 PRINTS Proline rich extensin signature 240 256 - -
Trre9g00012 262 MobiDBLite consensus disorder prediction 154 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00012 Trre-Chr9 261723 262975 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00012 - - vra:106777522 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00012 9 261723 262975 Trre9g00012 9 261723 262975 ECH