Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05983 ATGTCCACCGCCAACTTATTATTAATATCTATTCTGAGTATCTCCTTTCTCACCCACTCCGTCGCCGCCCGACCCTATGTTCTTGTCCTCTCCCAGGAAGACTTCAAAGACGATGTCCCTCCCGAATCCGATTCCTCCGCTGAGTGGGACGAGTTCGGCGACTCTGATTCCCACAAGTCCGAAGAGGATCTTGACCCTGGCTCATGGCGCCAAATCTTCGAACCCTCTCCCACAGACCCCCAACCCCAATCCGATACGGAGCTTCTATACTACTCCTCCGTCTCCAAGCTAATGACTGGGGACGCCCGTCTAATGGAAGAGGGCTCCGGTGAGATCGAGGCGGCTGCAGAATCTGGTTACCCTGCCGCTCAATCAGTTTTAGGGTTTTTGTGGGGAATGGGGCTTTTTCGAGAGAGGAGCAAACAGAAAGCATTTGTTTATCATCACTTTGCTTCGGAGGGTGGCAATATGCAATCCAAAATGGCTCTCGCTTATCTCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTGGCTGAAGTTGCTGTAAATAGTTTTCTTATTTCCAAAGATTCTCCTGTCATTGAACCTGTTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTCAGAAAGTCTAAAGGGGAAGAGGACGACGACTTTCAGATTCTCGAATATCAGGCACAGAAAGGGAATGCAGCTGCAATGTACAAAGTCGGACTCTTTTACTACTTCGGCCTTCGTGGATTGAGGCGTGACCATTCCAAGGCACTCTCTTGGTTCTTGAAGGCAGTGGACAAGGGTGAGCCTCGTTCTATGGAACTTCTCGGAGAGATATATGCCAGGGGAGCTGGTGTTGAGAGAAACTACACTAAAGCCTTTGAATGGCTTACTCTTGCATCTAAACACCACCTCTACTCTGCTTATAATGGGATCGGTTATTTGTATGTCAAAGGCTACGGAGTCGACAGCAAGAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAACGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTATCTCAAGGGAATTGGAGTCAAAAGAGATGTCAAGTTTGCATGTAAGTTCTTTATAGTGGCTGCCAATCACGGTCAACCGAAGGCTTTCTACCAGCTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGCTACTGCCCTATACAAGTTAGTTGCAGAACGAGGTCCCTGGAGTTCTTTGTCCAGATGGGCACTAGAAGCATACTTAAAAGGTGATGTTGGCAAGGCATATATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTGGCACAGAGTAATGCTGCTTGGATTCTTGACAAATATGGAGAACGAAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTTTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTAATTGGAGATGCATATTACTATGGTCGGGGAACTGCCAGGGATTATGACCGAGCTGCGGAGGCTTACATGCATGCCAAATCACAATCTAATGCACAAGCTATGTTCAATCTCGGATACATGCATGAGCATGGCCAAGGACTTCCCCTTGACCTTCATCTAGCCAAACGTTACTATGATGAAGCTCTAGAGCATGATCCGGCAGCTAAGTTGCCGGTCACACTGGCTCTTACAAGCTTGTGGGTCCGGAAGAACCATGCCGACAGTTTATTGGTCCACATAATTGATTCTTTGCCAGATGTCTATCCAAAATTGGAAGCTTGGGTAGAGAATGTGCTTTTGGAGGAGGGAAATGCCACGATTCTAACCCTTTTTGCATGCCTCCTAACTGTGCTGTATCTACGCGAGAGGCAACGGAGGCAAGCTCTTGTTGTAGCTGGAGAGGTCGCTCAGCCAAATCGCCCAAATGAACTTGGTGTGCCTGCACCCATGTAA 2010 0.4701 MSTANLLLISILSISFLTHSVAARPYVLVLSQEDFKDDVPPESDSSAEWDEFGDSDSHKSEEDLDPGSWRQIFEPSPTDPQPQSDTELLYYSSVSKLMTGDARLMEEGSGEIEAAAESGYPAAQSVLGFLWGMGLFRERSKQKAFVYHHFASEGGNMQSKMALAYLYTRQDMFDKSVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDDDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMYLKGIGVKRDVKFACKFFIVAANHGQPKAFYQLAKIFHLGVGFKKNVPLATALYKLVAERGPWSSLSRWALEAYLKGDVGKAYMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDEALEHDPAAKLPVTLALTSLWVRKNHADSLLVHIIDSLPDVYPKLEAWVENVLLEEGNATILTLFACLLTVLYLRERQRRQALVVAGEVAQPNRPNELGVPAPM 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05983 669 SMART sel1 312 348 IPR006597 -
Trre7g05983 669 SMART sel1 121 156 IPR006597 -
Trre7g05983 669 SMART sel1 537 572 IPR006597 -
Trre7g05983 669 SMART sel1 385 420 IPR006597 -
Trre7g05983 669 SMART sel1 239 275 IPR006597 -
Trre7g05983 669 SMART sel1 276 311 IPR006597 -
Trre7g05983 669 SMART sel1 501 536 IPR006597 -
Trre7g05983 669 SMART sel1 349 384 IPR006597 -
Trre7g05983 669 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 651 IPR044623 GO:0030433
Trre7g05983 669 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 204 315 - -
Trre7g05983 669 Gene3D Tetratricopeptide repeat domain 216 593 IPR011990 GO:0005515
Trre7g05983 669 Gene3D Tetratricopeptide repeat domain 111 198 IPR011990 GO:0005515
Trre7g05983 669 MobiDBLite consensus disorder prediction 36 85 - -
Trre7g05983 669 SUPERFAMILY HCP-like 220 329 - -
Trre7g05983 669 SUPERFAMILY HCP-like 432 573 - -
Trre7g05983 669 Pfam Sel1 repeat 277 309 IPR006597 -
Trre7g05983 669 Pfam Sel1 repeat 434 452 IPR006597 -
Trre7g05983 669 Pfam Sel1 repeat 352 383 IPR006597 -
Trre7g05983 669 Pfam Sel1 repeat 503 525 IPR006597 -
Trre7g05983 669 Pfam Sel1 repeat 313 347 IPR006597 -
Trre7g05983 669 Pfam Sel1 repeat 239 274 IPR006597 -
Trre7g05983 669 Pfam Sel1 repeat 537 571 IPR006597 -
Trre7g05983 669 Pfam Sel1 repeat 121 156 IPR006597 -
Trre7g05983 669 SUPERFAMILY HCP-like 113 186 - -
Trre7g05983 669 SUPERFAMILY HCP-like 331 460 - -
Trre7g05983 669 MobiDBLite consensus disorder prediction 51 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05983 Trre-Chr7 64120567 64124739 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05983 K14026 - gmx:100787823 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05983 7 64120567 64124739 Trre7g05983 7 64120567 64124739 ECH