Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05968 ATGCGTGAGATTCTTCATATTCAAGGAGGACAATGTGGAAACCAAATCGGAACGAAGTTCTGGGAAGCTGTATGCGATGAGCATGGGATTGACCCCATAGGACAATACATAGGGAACTCCAAACTTCAACAACTCGAAAGAGTGAATGTTTATTACAATGAGGGATCCAGTGGTCGATATGTGCCCCGAGCAGTGTTAATGGACCTTGAGCCTGGCACCATGGATGCAGTCCGGACCGGTCCTTATGGCCAGATTTTTCGGCCAGACAACTTTGTTTTCGGTCAATCTGGTGCTGGAAACAATTTTGCCAAGGGTCATTACACTGAGGGTGCTGAGCTCATTGACTTTGTCCTTGATGTTGTCAGAAAGGAGGTTGAGAATTGTGATTGCTTGCAAGGATTTCAAGTATGCCACTCCTTGGGAGGAGGAACAGGTTCTGGAATGGGAACATTGCTCATTTCAAAGATCAGAGAGGAATATCCTGATCGAATGATGCTCACTTTCTCTGTCTTTCCTTCACCAAAGGTGTCAGACACTGTTGTTGAGCCTTACAATGCAACACTTTCTGTTCACCAATTGGTGGAGAATGCTGATGAGTGTATGGTCCTTGATAATGAAGCACTGTATGACATCTGCTTCAGAACTCTGAAACTCACCACACCAAGTTGCCTTTCCATGGCCTCAACTTTTGTTGGTAATTCCACATCTATACAGGAGATGTTTAGGAGAGTGAGTGAACAATTCTCTGCCATGTTCAGAAGGAAAGCTTTCTTGCATTGGTACACTGGAGAAGGAATGGATGAAATGGAATTTACTGAAGCGGAAAGCAATATGAACGACCTTGTTGCAGAATATCAACAATACCAAGATGCCCCTGTTGACGATGGTGATGATTACCAAGAAGAAGAAGAAGAAGAAGAGGGTGCCCAAATTTGA 936 0.4412 MREILHIQGGQCGNQIGTKFWEAVCDEHGIDPIGQYIGNSKLQQLERVNVYYNEGSSGRYVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNFAKGHYTEGAELIDFVLDVVRKEVENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCLSMASTFVGNSTSIQEMFRRVSEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAPVDDGDDYQEEEEEEEGAQI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05968 311 PANTHER TUBULIN 227 289 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 191 211 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 94 105 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 152 173 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 133 151 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 107 131 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 177 190 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Tubulin signature 52 71 IPR000217 GO:0005874|GO:0007017
Trre7g05968 311 Coils Coil 271 291 - -
Trre7g05968 311 PRINTS Beta-tubulin signature 109 127 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Beta-tubulin signature 153 165 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Beta-tubulin signature 213 225 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Beta-tubulin signature 89 100 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Trre7g05968 311 PRINTS Beta-tubulin signature 42 59 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Trre7g05968 311 CDD beta_tubulin 2 289 - -
Trre7g05968 311 SMART Tubulin_4 48 245 IPR003008 GO:0005525
Trre7g05968 311 MobiDBLite consensus disorder prediction 285 311 - -
Trre7g05968 311 SUPERFAMILY Tubulin C-terminal domain-like 220 289 IPR008280 -
Trre7g05968 311 FunFam Tubulin beta chain 1 279 - -
Trre7g05968 311 MobiDBLite consensus disorder prediction 294 311 - -
Trre7g05968 311 Pfam Tubulin/FtsZ family, GTPase domain 3 212 IPR003008 GO:0005525
Trre7g05968 311 Gene3D Tubulin/FtsZ, GTPase domain 1 269 IPR036525 -
Trre7g05968 311 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Trre7g05968 311 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 141 147 IPR017975 GO:0005525|GO:0005874|GO:0007017
Trre7g05968 311 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 230 IPR036525 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05968 Trre-Chr7 64050683 64052233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05968 K07375 - oeu:111365274 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05968 7 64050683 64052233 Trre7g05968 7 64050683 64052233 ECH