Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05945 ATGTCTGAGGGGCTCGTTCTTCGCGGCACCATGCGTGCTCACACCGATGTTGTCACCGCCATTGCCACCCCTATCGACAACTCCGACATGATTGTCACTGCTTCACGTGACAAATCCATCATCCTTTGGCACCTTACCAAGGAGGACAAGACCTACGGTGTTCCCCGCCGCCGTCTCACAGGTCACTCTCACTTTGTCCAGGATGTTGTTCTCTCATCCGACGGTCAGTTCGCTCTTTCCGGTTCATGGGACGGTGAACTCCGTCTTTGGGACCTCAACGCTGGAACCTCCGCTCGCCGATTCGTTGGTCACACCAAAGATGTTCTCTCCGTAGCTTTCTCGATCGACAACCGTCAGATCGTGTCTGCTTCTCGTGACCGCACGATTAAGCTGTGGAACACTCTCGGTGAATGCAAATACACCATTCAAGACGGTGATGCTCATTCCGATTGGGTTAGCTGTGTGAGATTCAGCCCTAGCACTCTTCAACCGACAATTGTCTCTGCTTCATGGGATCGTACCGTCAAGGTTTGGAATCTGACCAATTGCAAGCTGAGAAACACTCTTGCTGGACATTCTGGATACGTGAACACCGTTGCTGTTTCACCTGATGGTTCACTCTGTGCTTCTGGTGGCAAAGATGGTGTTATTCTTCTTTGGGATTTGGCTGAGGGAAAGAGACTTTACTCTCTTGATGCTGGTTCTATTATTCATGCTTTGTGTTTCAGTCCTAATAGGTACTGGCTATGTGCTGCAACTGAATCCAGCATCAAGATCTGGGATTTGGAGAGCAAGAGCATTGTTGAGGATTTGAAGGTTGACCTTAAGAATGAGGCTGATGCTACCGCTGGTGGTGGTGGTACCACAACTACTAAGAAGAAGGTTATCTACTGTACTAGCTTGAACTGGAGTGCAGATGGAAGCACTTTGTTCAGTGGATATACAGATGGTGTTGTCAGAGTTTGGGGTATTGGTCGTTTTTAG 984 0.4898 MSEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKNEADATAGGGGTTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGRF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05945 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Trre7g05945 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Trre7g05945 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Trre7g05945 327 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Trre7g05945 327 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Trre7g05945 327 Pfam WD domain, G-beta repeat 299 322 IPR001680 GO:0005515
Trre7g05945 327 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Trre7g05945 327 Pfam WD domain, G-beta repeat 146 179 IPR001680 GO:0005515
Trre7g05945 327 Pfam WD domain, G-beta repeat 235 261 IPR001680 GO:0005515
Trre7g05945 327 Pfam WD domain, G-beta repeat 187 221 IPR001680 GO:0005515
Trre7g05945 327 CDD WD40 7 322 - -
Trre7g05945 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Trre7g05945 327 Gene3D - 4 327 IPR015943 GO:0005515
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Trre7g05945 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Trre7g05945 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Trre7g05945 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Trre7g05945 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Trre7g05945 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Trre7g05945 327 SMART WD40_4 288 323 IPR001680 GO:0005515
Trre7g05945 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Trre7g05945 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 327 - -
Trre7g05945 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 3 324 IPR045223 GO:0043022|GO:0045182
Trre7g05945 327 SUPERFAMILY WD40 repeat-like 7 324 IPR036322 GO:0005515
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Trre7g05945 327 FunFam Receptor for activated C kinase 1 8 327 - -
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Trre7g05945 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Trre7g05945 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05945 Trre-Chr7 63869866 63871400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05945 140 324 Miscellaneous Gene Families AT5G08390 25.668 1.20e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05945 K14753 - gmx:100778205 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05945 7 63869866 63871400 Trre7g05945 7 63869866 63871400 ECH