Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05933 ATGGGGAGCCCTGGGTTGAGCAACCGCACTAGCGGGCAGCAGCGATGGTTAGGGATAACAGAACCCATATCATTGAGCGGACCAACTGAATATGATGTCGCTAAGACCCGTGAACTCGAGAAGTACTTGCAAGACGCCGGCTTGTATGAGAATCAGGAGGAAGCAATTTGTAGGGAGGAAGTGCTAGGCAGGCTGGACCAGATTGTGAAGATTTGGGTCAAATCGATTAGCCGTGCAAAGGGATTTAACGAACAAATGGTGCAAGAAGCAAATGCCAAGATTTTTACTTTTGGCTCCTATCGCCTAGGGGTGCATGGCCCTGGAGCAGATATTGATGTTCTTTGTGTGGGACCTAGACATGCAACCAGAGATGAAGATTTCTTTGGTGAGCTACATAAAATGCTATCCGAGATGCCAGAAGTGACAGAGTTGCACCCAGTGCCTGATGCTCATGTTCCAGTGATGGGTTTCAAGTTCAATGGCGTCTCTATGGATCTCCTTTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATTTATCACAGGAAGCAATATTACAAAATACAGACGAGCAAACTGTTCGCAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTGCGTTTGGTTCCAAATATTCAGAATTTTCGCACAACATTGAGATGCATGAAGTTATGGGCTAAGCGTCGTGGCGTTTATTCAAATGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTGGTTGCTCGAATATGCCAGCTATATCCGAATGCACTGCCTAGTATGTTGGTGTCACGATTCTTTAGGGTATATAATCAGTGGCATTGGCCAAACCCAGTAATGCTTTGCGCTATTGAAGAAGGATCTCTTGGACTTCAAGTTTGGAATCCTAGAAGAAATCCCAAGGATAAATATCATATAATGCCGATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTTAAGTACATTGCGTATTATGACAGAGGAGTTTCAGAGGGGACATGAAATATGTGAGGCTATGGAGGCTAACAACGCTGATTGGGATACTCTTTTTGAGACCTATCCATTTTTTGAAGCTCATAAGAATTATTTGTGGATAGACATTTCCGCAGAGAATGCTGATGATCTTAGAAACTGGAAAGGCTGGGTTAAATCTCGAATGCGGCAGTTGATATTGAAGATTGAGAGGGACACGTCTGGCATGCTTCAGTGTCATCCACATCCTGATGATTTTTCAGATAAATCTAGACATCTACACTGTTCTTACTTCATGGGTCTGCAACGTAAACAAGGAGTTGCTGCCACTGAAGGCGAACAATTTGATATAAGAGTAGCTGTTGATGAATTTAAGCATACTGTTGGTATGTATAATCAATGGAAACCTGGAATGGATATCTCCGTCTCCCATGTGAAACGCCGCAATATACCCGCCTTTGTATTTCCTGGTGGTGTTCGGCCTAACCGTCCGTCCAAAGTATCCTGGGAGAGTAAGCGAAGTTCAGAGCTTAGGATTCCCGGTCATGGTCAAGCAGAAAAGTCTCAAGAAGGTAAAGTGGCTGCATTAGGAGGAAATGATGACAGGAAGAGAAAGCGAGCAGAGGATAGTACGGATGACTTGAGAAATTCCAAGGTCTTTTCATCTTTGCCACCCTCCAGCAGGGAAGTTCATGAAGATGGAAATCCTGTCATCGTTGCTAGTTCTTGTTCTGTGAAATGTGATGACACAGAAGTCAACAGTATGAGTGAACAAAAGAGTGAGAAACCTGATTTGAATTTTTCTGGGGAGTATCCTTCTGTGGATAGAGAGACCAATGGATCAGAGAAAAGCAACTCACAAATTAACCCTCCACTTATTACTAGTTTTAACGAAGCAGGAAAACTCGACATTGAGAAGATTACATGCGGTCCATACGATGCACATCAAGTCTTCTCAGGAGAACCTGATGAGCTTGAAGATGATCTTCAGTATAGAAATCAAATAAAAGATTTTGGCGGGAACCTGAAAAACGGCAACTTGGACTCTTCAAACTCAGAGTCTGCAGTGGCAGCAGAACCAGTTTTTTCTCAAAAGGAAAATAGTAGTTCAACTCATATATACTCTAATGGGGGCTTGGAGGAGCTTGAGCCTGCTGAACTCACAGCGCCATTGTTAAGTGGGAATCCTGCACCAGTACCACAGCGGAAACGCCTTATTAGGTTAAATTTCACTTCGTTGGGGAAAGCTGCTGGCAAAAGTTCTTAG 2268 0.4321 MGSPGLSNRTSGQQRWLGITEPISLSGPTEYDVAKTRELEKYLQDAGLYENQEEAICREEVLGRLDQIVKIWVKSISRAKGFNEQMVQEANAKIFTFGSYRLGVHGPGADIDVLCVGPRHATRDEDFFGELHKMLSEMPEVTELHPVPDAHVPVMGFKFNGVSMDLLYAKLSLWVIPEDLDLSQEAILQNTDEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMKLWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPSMLVSRFFRVYNQWHWPNPVMLCAIEEGSLGLQVWNPRRNPKDKYHIMPIITPAYPCMNSSYNVSLSTLRIMTEEFQRGHEICEAMEANNADWDTLFETYPFFEAHKNYLWIDISAENADDLRNWKGWVKSRMRQLILKIERDTSGMLQCHPHPDDFSDKSRHLHCSYFMGLQRKQGVAATEGEQFDIRVAVDEFKHTVGMYNQWKPGMDISVSHVKRRNIPAFVFPGGVRPNRPSKVSWESKRSSELRIPGHGQAEKSQEGKVAALGGNDDRKRKRAEDSTDDLRNSKVFSSLPPSSREVHEDGNPVIVASSCSVKCDDTEVNSMSEQKSEKPDLNFSGEYPSVDRETNGSEKSNSQINPPLITSFNEAGKLDIEKITCGPYDAHQVFSGEPDELEDDLQYRNQIKDFGGNLKNGNLDSSNSESAVAAEPVFSQKENSSSTHIYSNGGLEELEPAELTAPLLSGNPAPVPQRKRLIRLNFTSLGKAAGKSS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05933 755 MobiDBLite consensus disorder prediction 500 519 - -
Trre7g05933 755 MobiDBLite consensus disorder prediction 606 626 - -
Trre7g05933 755 Pfam Poly(A) polymerase central domain 18 361 IPR007012 GO:0043631|GO:1990817
Trre7g05933 755 Gene3D - 18 360 - -
Trre7g05933 755 MobiDBLite consensus disorder prediction 683 710 - -
Trre7g05933 755 FunFam Putative poly(A) polymerase gamma 177 360 - -
Trre7g05933 755 FunFam Nuclear poly(A) polymerase 4 364 479 - -
Trre7g05933 755 FunFam Poly(A) polymerase alpha, putative 50 206 - -
Trre7g05933 755 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Trre7g05933 755 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
Trre7g05933 755 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Trre7g05933 755 MobiDBLite consensus disorder prediction 530 549 - -
Trre7g05933 755 Pfam Nucleotidyltransferase domain 79 159 IPR002934 GO:0016779
Trre7g05933 755 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 361 - -
Trre7g05933 755 CDD NT_PAP_TUTase 58 212 - -
Trre7g05933 755 SUPERFAMILY Nucleotidyltransferase 14 210 IPR043519 -
Trre7g05933 755 MobiDBLite consensus disorder prediction 683 711 - -
Trre7g05933 755 Pfam Poly(A) polymerase predicted RNA binding domain 426 496 IPR007010 GO:0003723|GO:0043631
Trre7g05933 755 Pfam Poly(A) polymerase predicted RNA binding domain 365 424 IPR007010 GO:0003723|GO:0043631
Trre7g05933 755 MobiDBLite consensus disorder prediction 498 569 - -
Trre7g05933 755 PANTHER POLY A POLYMERASE 11 529 - -
Trre7g05933 755 MobiDBLite consensus disorder prediction 585 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05933 Trre-Chr7 63803262 63808322 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05933 K14376 - gmx:100816915 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05933 7 63803262 63808322 Trre7g05933 7 63803262 63808322 ECH