Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05597 ATGCCTGGTCTCGTTTCCCCAGGTGGACCTCCGCCCCGTATCACTTTACCCGAAACCCCAACCCAAAGATCCGAACCATCCAAAACACCATCACCACTCCCCAAAAAACCACCCTCTCCTTCACCTTCTTCTCGCTCCAAGAAAAAAACCCCCGAAACCCCAAACAACAACACTTTACTCTCAGAAGCTTCACTCGATAACCCAGATCTAGGCCCATTCCTTCTCAAAGTAGCCCGTGACACTATCGCTTCTGGCGATGGGCCTGCCAAAGCCCTCGACTACGCAATCCGGGCTTCCAAATCATTCGAACGATGCGCTATTGAAGGTGAGCCGAGTCTCGATTTAGCCATGAGTCTCCATGTGTTAGCTGCGATTTACTGTAGCTTAAGCCGATTCGAAGAAGCTGTTCCTGTTCTTGAACGCGCGATCCTTGTTCCTAACGTTGAACTCGGTGCTGATCATGCTCTCGCTGCTTTTTCCGGTTATATGCAATTAGGTGATACTTTTTCGATGTTAGGTCAAGTTGATAAATCAATTTCTTGTTACGATCAAGGTCTTCAGATTCAGATCCAAACCCTAGGTGAAACCGATCCACGCGTCGGTGAAACGTGTCGGTATTTGGCGGAGGCGAATGTTCAGGCGATGCAGTTTGATAAAGCGGAAGAGCTTTGTAACAAAACGTTGGAGATTCATCGTGCTCATAGTGAACCTGCTTCTCTTGAAGAAGCTGCAGATCGGAGACTTATGGCTTTGATTTGTGAAGCTAAAGGTGAGTACGAATCGGCGTTGGAGCATCTTGTTCTTGCGAGCATGGCGATGATCGCGAACGGTCAAGATAATGAAGTTGCTTCTATTGATGTAAGCATTGGAAATATTTATATGTCGCTGTGTCGATTTGATGAAGCTATATTTTCTTATCAGAAAGCGCTTACCGTGTTTAAATCTTCGAAAGGAGAGAATCATCCTTCCGTTGCGTCGGTGTTTGTTCGTTTGGCTGATTTGTATCATAGGACAGGGAAGCTTCGTGAATCGAAATCGTATTGTGAAAATGCGCTTAGAATATACTCGAAACCGGTTCCTGGAACCACTGCTGAAGAGATTGCCAGTGGTTTGACGGAAGTTTCAGCGATATTTGAATCTGTTGATGATCCGGAGGAAGCCTTGAAGCTGTTGCAGAAGGCGATGAAATTGTTGGAGGATAAACCGGGACAGCAGAGTACGATTGCTGGGATTGAAGCGCGGATGGGAGTGATGTATTATATGATTGGGAAGTACGATGAAGCGAGGAGTGCTTTCGAGAGTGCTGTGTTGAAATTGAGAACTAGTGGGGAAAGGAAATCTGCGTTTTTCGGTGTTGTTTTGAATCAGATGGGTTTGGCTTGTGTGCAATTGTTTAAGATTGATGAAGCTGCTGAATTGTTTGAGGAAGCTAGGGGAATTCTTGAAACAGAATGTGGACCTTGTCATCAAGATACTCTTGGAGTATATAGCAATCTTGCAGCAACTTATGATGCAATGGGAAGAGTTGGAGATGCAATTGAAATCTTAGAATATGTGCTGAAGTTGAGGGAAGAGAAGCTTGGAATAGCGAATCCTGATTTTGAAGACGAGAAGCGTCGTTTGGCTGAGTTGCTGAAAGAAGCTGGCAAAACACGAGACAGAAAAGCAAAATCTTTGGAAAATCTTATAGATCCAAATTCAAAGAGGACAAAGAAGGAGAGTACCAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1758 0.4488 MPGLVSPGGPPPRITLPETPTQRSEPSKTPSPLPKKPPSPSPSSRSKKKTPETPNNNTLLSEASLDNPDLGPFLLKVARDTIASGDGPAKALDYAIRASKSFERCAIEGEPSLDLAMSLHVLAAIYCSLSRFEEAVPVLERAILVPNVELGADHALAAFSGYMQLGDTFSMLGQVDKSISCYDQGLQIQIQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGEYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIASGLTEVSAIFESVDDPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMIGKYDEARSAFESAVLKLRTSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILETECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKESTKRWPGLGFRI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05597 585 MobiDBLite consensus disorder prediction 550 585 - -
Trre7g05597 585 Gene3D Tetratricopeptide repeat domain 451 577 IPR011990 GO:0005515
Trre7g05597 585 Gene3D Tetratricopeptide repeat domain 272 450 IPR011990 GO:0005515
Trre7g05597 585 MobiDBLite consensus disorder prediction 1 17 - -
Trre7g05597 585 Gene3D Tetratricopeptide repeat domain 88 271 IPR011990 GO:0005515
Trre7g05597 585 SMART tpr_5 243 276 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 493 526 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 368 401 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 116 149 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 201 234 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 451 484 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 409 442 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 159 192 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 283 316 IPR019734 GO:0005515
Trre7g05597 585 SMART tpr_5 325 358 IPR019734 GO:0005515
Trre7g05597 585 ProSiteProfiles TPR repeat profile. 283 316 IPR019734 GO:0005515
Trre7g05597 585 Pfam Tetratricopeptide repeat 282 356 - -
Trre7g05597 585 Pfam Tetratricopeptide repeat 453 525 - -
Trre7g05597 585 MobiDBLite consensus disorder prediction 43 64 - -
Trre7g05597 585 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 27 568 - -
Trre7g05597 585 SUPERFAMILY TPR-like 157 356 IPR011990 GO:0005515
Trre7g05597 585 Coils Coil 534 554 - -
Trre7g05597 585 MobiDBLite consensus disorder prediction 1 65 - -
Trre7g05597 585 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 445 562 - -
Trre7g05597 585 SUPERFAMILY TPR-like 410 551 IPR011990 GO:0005515
Trre7g05597 585 MobiDBLite consensus disorder prediction 550 579 - -
Trre7g05597 585 Pfam MalT-like TPR region 121 270 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05597 Trre-Chr7 61474762 61476891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05597 - - gmx:100815100 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05597 7 61474762 61476891 Trre7g05597 7 61474762 61476891 ECH