Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05590 ATGGCATGCTTTGGTATTTCTGGTACATGTTCTTTTGAGGTATCTTTGGTTAAGTATGAAGGTCTTAGATTGACTCAAAGAATGCAAATGTATTCAGTTACATGCATGCCAAAAAGATACATTTTAGCTTCAGGAAAGAAATGCAAAACAATCAAAGCTATGGCTTCTCCAACAAGAGCAGCACCTAAAAGAGAGAAAGATCCAAAAAAGAGAGTAGTAATAACAGGAATGGGTCTTGTGTCAGTGTTTGGAAGTGACATAGATACATTTTACAACAAGCTTTTAGAAGGAGAAAGTGGGATAAGCCTAATAGATAGGTTTGATGTCTCAAGTTTTCCCGTCCGTTTTGGTGGTCAGATACGCGATTTCTCTACAAAAGGTTACATCGATGACAAGAATCACCGGCACCTCGATGATTGTTTGAAGTATTGTTTAGTTTCAGGCAAGAGAGCACTTGAAGATGCTAATCTTGGACAAGAAGTCCTTAACACTATGGACAAAACAAGAATAGGAGTTCTAGTGGGAACAGGACTTGGAGGTGTAGACACTTTTAGCAATGCTGTTGATGCTCTCATTCAAAAGGGACATAGTGAAATTTCTCCATTTTTCATTCCCTATTCCATCCCCAACATGAGTTCTGCTTTGTTGGCTATAGAAACTGGCCTAAAGGGACCAAATTATTCCATTTCTACTGCTTGTGCAACAGCAAATTACTGCTTTTGTGCTGCTTCTCATCATATTAGAAGTGGTGAAGTAGATATTATGGTGGTTGGTGGTACTGAAGCTTCAATTATACCTTCTGGTGTTGGAGGATTCATTGCTTGTAGGGCTTTGTCTCAGAGGAATGAAGAACCTAAGAAGGCTTCGAGACCATGGGACAAAAATCGCGATGGTTTTGTCATCGGTGAAGGCTCTGGTATCCTGATAATGGAGAGTTTGGAGAGTGCAACAAAGAGAGGAGCAAGAATAATTGCTGAATACTTAGGTGGTGCCATAACATGTGATGCTCATCATATGACTGATCCAAGGTCTGATGGATTTGGAGTTTCATCTTGCATAAAAAAGAGTTTAGAAGATGCTAGGGTTTCCATCGAAGAGGTGAACTATGTGAATGCTCATGCCACATCAACACTAGCTGGTGACTTGGCTGAGGTAAATGCAATCAAAAAGGTTTTTAAGGATACATCAGAATTGAAAATGAATGGGACAAAGTCAATGATTGGCCATTGTCTTGGTGCTGCTGGTGGTTTGGAAGCTATAGCAACTATCAAAGCAATAACAACTGGCTGGTTGCATCCAACTATTAACCAAGATAACTTGGAGGATGATGTTACAATTGACACTGTTCATAATGTTAAGAAAAAGCATGAAGTTAATGTTGCTATCTCCAATTCATTTGGGTTTGGTGGACACAATTCAGTAGTTGTCTTTGCCCCTTACATGCCCTAA 1449 0.3961 MACFGISGTCSFEVSLVKYEGLRLTQRMQMYSVTCMPKRYILASGKKCKTIKAMASPTRAAPKREKDPKKRVVITGMGLVSVFGSDIDTFYNKLLEGESGISLIDRFDVSSFPVRFGGQIRDFSTKGYIDDKNHRHLDDCLKYCLVSGKRALEDANLGQEVLNTMDKTRIGVLVGTGLGGVDTFSNAVDALIQKGHSEISPFFIPYSIPNMSSALLAIETGLKGPNYSISTACATANYCFCAASHHIRSGEVDIMVVGGTEASIIPSGVGGFIACRALSQRNEEPKKASRPWDKNRDGFVIGEGSGILIMESLESATKRGARIIAEYLGGAITCDAHHMTDPRSDGFGVSSCIKKSLEDARVSIEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSELKMNGTKSMIGHCLGAAGGLEAIATIKAITTGWLHPTINQDNLEDDVTIDTVHNVKKKHEVNVAISNSFGFGGHNSVVVFAPYMP 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05590 482 NCBIfam beta-ketoacyl-ACP synthase II 70 477 IPR017568 GO:0006633|GO:0016747
Trre7g05590 482 ProSiteProfiles Ketosynthase family 3 (KS3) domain profile. 69 479 IPR020841 -
Trre7g05590 482 FunFam 3-oxoacyl-[acyl-carrier-protein] synthase 2 44 482 - -
Trre7g05590 482 SUPERFAMILY Thiolase-like 284 479 IPR016039 GO:0016746
Trre7g05590 482 SMART Beta-ketoacyl synthase 72 482 IPR020841 -
Trre7g05590 482 SUPERFAMILY Thiolase-like 70 321 IPR016039 GO:0016746
Trre7g05590 482 ProSitePatterns Ketosynthase family 3 (KS3) active site signature. 224 240 IPR018201 GO:0004315|GO:0006633
Trre7g05590 482 PANTHER POLYKETIDE SYNTHASE-RELATED 68 480 IPR000794 -
Trre7g05590 482 CDD KAS_I_II 70 477 IPR000794 -
Trre7g05590 482 Gene3D - 37 482 IPR016039 GO:0016746
Trre7g05590 482 Pfam Beta-ketoacyl synthase, N-terminal domain 70 316 IPR014030 -
Trre7g05590 482 Pfam Beta-ketoacyl synthase, C-terminal domain 325 437 IPR014031 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05590 Trre-Chr7 61428812 61432905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05590 22 482 Acyl Lipid Metabolism Gene Families AT5G46290 67.850 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05590 K09458 - gmx:100808453 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05590 7 61428812 61432905 Trre7g05590 7 61428812 61432905 ECH