Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05575 ATGAGCTGTTTTTGCTTGACGAAAGGAAAACCAAAAAATAAGCGCGAACAATCTGCTATTCTTGCTCAGGAGACATCCTTTACTGTAAATGAGGTTGAGGCATTATTTGACTTGTTTAAGAAACTAAGCAGTTCTATTATTGATGATGGATGCATTCACAAGGAGGAGTTTCAACTTGCACTTTTTAGAAATAGTAGCAAGCAGAATCTACTTGCAAGCAGGGTATTCGATATGTTTGATATTAAGCGTAATGGAGTAATTGAATTTGGAGAATTTGTTCGCTCACTAAGCATCTTTCATCCAAGGGCATCCGAAGACAAAAAAATTGAATTTGCATTTAAATTGTTTGACCTTCGAAAAACTGGATACATCGAGCACAGTGAGTTGAAGGAGATGGTTTTGGCTACTTTGACTGAATCAGATGTTACAGTTCCAAACGATATTGTTGAATCAATTGTGGAAAAGACAATGAAGGAGGTTGATTTAAAAAGAGATGGGAAGATTGATATGGAAGAGTGGAAAGAGTATGCATCAAAAACTCCTTCTCTTCTTAAGATCATGACACTGCCATATCTAAAGGATATAACTATTGCATTTCCAAGCTTTGTTTTGCACACGGAGGCGGAAGACTAG 633 0.3681 MSCFCLTKGKPKNKREQSAILAQETSFTVNEVEALFDLFKKLSSSIIDDGCIHKEEFQLALFRNSSKQNLLASRVFDMFDIKRNGVIEFGEFVRSLSIFHPRASEDKKIEFAFKLFDLRKTGYIEHSELKEMVLATLTESDVTVPNDIVESIVEKTMKEVDLKRDGKIDMEEWKEYASKTPSLLKIMTLPYLKDITIAFPSFVLHTEAED 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05575 210 SMART efh_1 108 136 IPR002048 GO:0005509
Trre7g05575 210 SMART efh_1 152 180 IPR002048 GO:0005509
Trre7g05575 210 SMART efh_1 71 99 IPR002048 GO:0005509
Trre7g05575 210 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Trre7g05575 210 SUPERFAMILY EF-hand 20 202 IPR011992 -
Trre7g05575 210 CDD EFh 108 175 IPR002048 GO:0005509
Trre7g05575 210 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Trre7g05575 210 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Trre7g05575 210 FunFam calcineurin B-like protein 3 17 210 - -
Trre7g05575 210 PRINTS Recoverin family signature 75 96 - -
Trre7g05575 210 PRINTS Recoverin family signature 122 140 - -
Trre7g05575 210 PRINTS Recoverin family signature 168 188 - -
Trre7g05575 210 Pfam EF-hand domain pair 49 94 IPR002048 GO:0005509
Trre7g05575 210 PANTHER CALCINEURIN B 2 210 IPR045198 GO:0005509|GO:0019722|GO:0019900
Trre7g05575 210 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Trre7g05575 210 Gene3D - 18 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05575 Trre-Chr7 61335145 61336769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05575 1 210 EF-hand Containing Proteins AT4G17615 54.286 5.16e-85 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05575 K06268 - egr:104441667 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05575 7 61335145 61336769 Trre7g05575 7 61335145 61336769 ECH