Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05574 ATGGGGTGTACATGCACCAAAGCGCGACTTCAGCGTGAAGATCCAGCAAGTCTAGCTGAACAAACTTATTTTAATATTTCTGAAATTAAAGCTTTATATGATCTGTTCAAGAAATTAAGCAGCTCTATGGTCAATGATGGACTAATTAGCAAAGAAGAGTTTCAGCTTGGCATATTTGGAAGCAGCAAGAAGCGGAACCTTTTCGGCGACAGGGTGTTTGATTTATTTGACTCGAAAAAAGACGGTATGATAGATTTCGGAGAGTTTGTTAAAGCTTTAAGCGTCTTCCATCCGGCAGCGCCTCAACCACAAAAGGCAGCTTTTGCATTTCAACTCTATGATATAAGGCAAAGCGGCTTTATTGAACGAGACGAGGTAAGGGAGATGATACTGGCACTCCTAAGAGAGTCTGATTTGGTTCTTTCTCATGATATAATTGAGTTCATAATTGATAAGGCTTTTAAAGAAGCTGATTTAAAAGGAGATGGAAGGATTGATCCAGAAGAGTGGGAAAAGTTTGTTGCTCAAAATCCATCCTTACTAAGGAATATGACAATACCATATTTGAAGGATCTAAATGTGCAGTTTCCTGGTTTTGAACAAATATCAGACATTGAAGATAATACAAACAGCATTCCATGA 642 0.3832 MGCTCTKARLQREDPASLAEQTYFNISEIKALYDLFKKLSSSMVNDGLISKEEFQLGIFGSSKKRNLFGDRVFDLFDSKKDGMIDFGEFVKALSVFHPAAPQPQKAAFAFQLYDIRQSGFIERDEVREMILALLRESDLVLSHDIIEFIIDKAFKEADLKGDGRIDPEEWEKFVAQNPSLLRNMTIPYLKDLNVQFPGFEQISDIEDNTNSIP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05574 213 ProSiteProfiles EF-hand calcium-binding domain profile. 70 99 IPR002048 GO:0005509
Trre7g05574 213 FunFam calcineurin B-like protein 3 14 207 - -
Trre7g05574 213 SUPERFAMILY EF-hand 16 198 IPR011992 -
Trre7g05574 213 Pfam EF-hand domain pair 105 173 IPR002048 GO:0005509
Trre7g05574 213 CDD EFh 105 175 IPR002048 GO:0005509
Trre7g05574 213 Gene3D - 14 208 - -
Trre7g05574 213 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Trre7g05574 213 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Trre7g05574 213 SMART efh_1 149 177 IPR002048 GO:0005509
Trre7g05574 213 SMART efh_1 68 96 IPR002048 GO:0005509
Trre7g05574 213 SMART efh_1 105 133 IPR002048 GO:0005509
Trre7g05574 213 Pfam EF hand 70 90 IPR002048 GO:0005509
Trre7g05574 213 PRINTS Recoverin family signature 72 93 - -
Trre7g05574 213 PRINTS Recoverin family signature 119 137 - -
Trre7g05574 213 PRINTS Recoverin family signature 10 24 - -
Trre7g05574 213 PRINTS Recoverin family signature 165 185 - -
Trre7g05574 213 PANTHER CALCINEURIN B 2 206 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05574 Trre-Chr7 61332920 61334451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05574 22 199 EF-hand Containing Proteins AT5G24270 61.236 1.11e-83 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05574 K06268 - gmx:100808628 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05574 7 61332920 61334451 Trre7g05574 7 61332920 61334451 ECH