Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05489 ATGGCAGTTATAACTAACTCCTTATCACTCAAACACTCTCTCTCGCTTGGTTTCTCCCAAACAAAAATTCTTACTCGTCCTTCTTCCACTTCCCTCTCATTCAGAAGATGTTACGCATCTTACGCAAATGAAAACCGCGAGTATGTCATCGTTGGCGGAGGAAACGCCGCGGGATACGCCGCTCGTACTTTCGTTGAGCACGGCGTCGCCGATGGACGTCTTTGTATTGTTACAAAAGAAGGAGTTGCACCTTACGAGCGTCCCGCATTAACAAAAGCCTACTTGTTTCCACCGGAAAAGAAACCTGCACGTCTTCCTGGGTTTCACACTTGTGTTGGATCCGGTGGCGAAAGGCAAACTCCGGATTGGTATAAAGAGAAAGGGATTGAGATGTTGTATGAAGATCCAGTAGAAAACATTGATATTCAAAAGCAAACCTTGACAACAAGTTCTGGAAAGCTTCTTAAGTATGGATCGCTTATTATCGCTACAGGATGTACAGCCTCAAGGTTTCCAGACAAAATTGGGGGAAACCTATCTGGTGTTCACTATATTCGGGATGTTGCCGATGCTGATGCACTGGTTTCATCGTTGGAAAAAGCAAAAAAGGTTGTAGTAGTTGGAGGTGGTTATATTGGAATGGAGATTGCTGCTGCAGCTGTTGCTTGGAAACTTGATACAACAATCATATTTCCAGATGATCATTTTTTACAAAGATTGTTCACTCCTTCTCTTGCCCGGAGATATGAAGAACTCTACCAAAAGAATGGAGTCAAAATATTGAAGGGTGCCTCCATTAAAAATTTGGAAGCTAGTTCTAATGGTAACGGACGTGTAGCTGCTGTGAAACTCGAAGATGGATCTATTGTTGAAGCAGATACGGTAATTATAGGTATTGGTTCAAAGCCTGCTGTGGGTCCCTTTGAGAGGGTGGGTTTGAATGCTGATGTCGGTGGTATACAGGTTGATGGTCAGTTCCGGACAAACATTCCTGGAATATTTGCTGTTGGTGATGTAGCTGCTTTCCCTTTAAAGATCTACAACCGTATTTCTCGAGTAGAACATGTAGATCATGCTCGTAGATCGGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAATCTAGCACGTATGATTATCTTCCATACTTCTACTCAAGGGTTTTTGAATATGAAGGAAGCACTAGAAAAGTATGGTGGCAGTTTTTTGGAGACAATGTTGGAGAAACAGTAGAAATTGGAAACTTTGATCCTAAAATAGCTACATTTTGGATTGAATCTGGTAAGCTGAAGGGAGTTCTTGTTGAAAGTGGGAGCCCTGAGGAATTTCAGCTCCTGCCTGAACTTGCCAGAAGGCAGCCTCCGATTGATAAAGCCAAACTTGAAAACGCAAGCTCAGTGGAGGAGGCCCTTGACATTGCTCGAGGATCCTTGCAAGCAGCTGTCTAG 1449 0.4348 MAVITNSLSLKHSLSLGFSQTKILTRPSSTSLSFRRCYASYANENREYVIVGGGNAAGYAARTFVEHGVADGRLCIVTKEGVAPYERPALTKAYLFPPEKKPARLPGFHTCVGSGGERQTPDWYKEKGIEMLYEDPVENIDIQKQTLTTSSGKLLKYGSLIIATGCTASRFPDKIGGNLSGVHYIRDVADADALVSSLEKAKKVVVVGGGYIGMEIAAAAVAWKLDTTIIFPDDHFLQRLFTPSLARRYEELYQKNGVKILKGASIKNLEASSNGNGRVAAVKLEDGSIVEADTVIIGIGSKPAVGPFERVGLNADVGGIQVDGQFRTNIPGIFAVGDVAAFPLKIYNRISRVEHVDHARRSAQHCVKALLSAQSSTYDYLPYFYSRVFEYEGSTRKVWWQFFGDNVGETVEIGNFDPKIATFWIESGKLKGVLVESGSPEEFQLLPELARRQPPIDKAKLENASSVEEALDIARGSLQAAV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05489 482 Gene3D - 171 300 IPR036188 -
Trre7g05489 482 Gene3D - 49 366 IPR036188 -
Trre7g05489 482 Gene3D - 383 469 IPR016156 GO:0016491|GO:0050660
Trre7g05489 482 PANTHER APOPTOSIS-INDUCING FACTOR 1 46 470 - -
Trre7g05489 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Trre7g05489 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 292 308 - -
Trre7g05489 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 203 221 - -
Trre7g05489 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 318 340 - -
Trre7g05489 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 49 68 - -
Trre7g05489 482 Pfam Pyridine nucleotide-disulphide oxidoreductase 47 363 IPR023753 GO:0016491
Trre7g05489 482 SUPERFAMILY FAD/NAD(P)-binding domain 42 370 IPR036188 -
Trre7g05489 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 293 307 - -
Trre7g05489 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 47 69 - -
Trre7g05489 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 333 340 - -
Trre7g05489 482 PRINTS Pyridine nucleotide disulphide reductase class-I signature 203 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05489 Trre-Chr7 60654475 60659667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05489 154 344 Acyl Lipid Metabolism Gene Families AT1G48030 26.368 1.19e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05489 K08232 - gmx:100819919 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05489 7 60654475 60659667 Trre7g05489 7 60654475 60659667 ECH