Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05471 ATGGGACACGGTGAAAAAGGAGGAAGACCGTTCAAAAAGCTCAAAGCCGCTGCTAAATTCGAAGATTCACGAAAAGGATTCGCTGATGATGAAGATGCATATGGCGGCGATGATGCATACGATGATGACGATGGAAAAACGAAGGATTTTAGCAAATTAGAGTTGAAACCGGATCACATAAATCGTCCTCTTTGGGCTTGTGACAATGGCCGGATATTCCTTGAGACTTTCTCTCCTTTGTACAAACAAGCTTATGATTTTCTCATTGCCATCGCCGAGCCTGTTTGCAGGCCTGAGTCGATGCACGAATACAATCTTACTCCACATTCGCTGTATGCTGCTGTTTCGGTTGGTTTAGAAACTGAAACAATTATAGCAGTTTTGAACAAATTATCCAAGACCAAGCTTCCTAAAGAGATGATTAAATTTATCCATGAATCTACTGCTAATTATGGGAAAGTGAAACTTGTTCTTAAGAAGAATCGTTACTTTGTGGAATCTCCGTTTCCAGAGGTATTGAAGACACTGCTCAGGGATGATGGTATATCTCGAGCAAGGATCACTTCCGAGGGTGCTCGTGGAGATGGATTTACAGTCAGCAAAGCATTAGGTGAAATTGAAGGCACTCATGATGAGTTGCTGAATGAAGCAGAAGTAGCAGCTGCTGCAGAAGAGAAAGAAGCTCATGCATTCGAAATTGATCCTGCTCAGGTTGAAAATGTAAAGCAACGTTGCTTGCCAAATGCTTTAAATTATCCTATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAACCCAGACCTTGACATGGAACTAAAGCCTCAAGCACAACCACGGCCATATCAAGAGAAGAGCCTCAGTAAAATGTTTGGAAATGGTAGAGCAAGATCCGGTATCATAGTTCTACCCTGTGGTGCTGGAAAGTCCCTAGTTGGCGTTTCAGCAGCTTGCCGTATAAAAAAAAGCTGTCTTTGTTTGGCAACAAATGCTGTTTCTGTGGATCAATGGGCTTTTCAGTTTAAACTATGGTCAACTATCCGAGATGAACACATTTGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACATATAATATGGTTGCTTTTGGGGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTTATGGACGAGGTACATGTGGTTCCTGCCCATATGTTTCGAAAAGTCATTAGTATCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACACTTGTGAGAGAGGACGAAAGAATTACAGATCTGAACTTCCTAATTGGTCCCAAACTGTATGAGGCAAATTGGTTAGATCTTGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTGCTGAGTATCTAAAGAAAGAGAACTCCAAGAAGAGACAGGCCCTTTATGTGATGAATCCAAATAAATTCCGAGCATGCGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGTGATAAAATTATAGTGTTTGCTGATAATCTTTTTGCTCTCACTGAGTATGCCATGAAACTTCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAGGCATTCAAAACTAGCAAAGACGTAAATACTGTTTTTCTTTCCAAGGTTGGTGACAACTCAATTGATATTCCTGAAGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCTCAACGTCTGGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAGGATAGGATGGCAGGTGGCAAAGAGGAATATAATGCATTTTTTTATTCCCTTGTGTCAACTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAGGGTTACAGCTTTAAGGTAATTACAAGCTTGCCTCCATCTGATGAAGGATCTCGCTTGCACTACCATCATCTCGATGATCAATTGGCACTACTTGGAAAGGTATTAAATGCTGGTGATGATGCTGTTGGATTAGAGCAACTAGAAGAAGATTCAGATGAAATCGCGCTTAAAAGTGCTCGTCGTTCTCAAGGATCGATGAGTGCAATGTCAGGTGCAAAAGGGATGGTTTATGTGGAGTACAGTACCGGACGTAACAGAGGCCAACAGATCAAGAGCAAGCCGAAAGATCCAGCAAAGAGACACGTCTTATTTAAAAAACGATATGGCCCAACCTAA 2301 0.412 MGHGEKGGRPFKKLKAAAKFEDSRKGFADDEDAYGGDDAYDDDDGKTKDFSKLELKPDHINRPLWACDNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKEMIKFIHESTANYGKVKLVLKKNRYFVESPFPEVLKTLLRDDGISRARITSEGARGDGFTVSKALGEIEGTHDELLNEAEVAAAAEEKEAHAFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLHYHHLDDQLALLGKVLNAGDDAVGLEQLEEDSDEIALKSARRSQGSMSAMSGAKGMVYVEYSTGRNRGQQIKSKPKDPAKRHVLFKKRYGPT 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05471 766 CDD SF2_C_XPB 471 635 - -
Trre7g05471 766 SMART helicmild6 535 613 IPR001650 -
Trre7g05471 766 Coils Coil 214 234 - -
Trre7g05471 766 PANTHER RAD25/XP-B DNA REPAIR HELICASE 53 735 - -
Trre7g05471 766 SMART ultradead3 275 456 IPR014001 -
Trre7g05471 766 FunFam Putative DNA repair helicase rad25 461 703 - -
Trre7g05471 766 Gene3D - 269 460 IPR027417 -
Trre7g05471 766 MobiDBLite consensus disorder prediction 738 766 - -
Trre7g05471 766 FunFam Probable DNA repair helicase RAD25 269 460 - -
Trre7g05471 766 CDD DEXHc_XPB 271 440 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 464 486 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 398 418 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 62 82 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 502 517 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 625 648 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 569 587 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 148 167 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 716 735 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 291 313 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 588 613 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 260 286 - -
Trre7g05471 766 PRINTS Xeroderma pigmentosum group B protein signature 522 544 - -
Trre7g05471 766 Pfam ERCC3/RAD25/XPB C-terminal helicase 460 708 IPR032438 -
Trre7g05471 766 Pfam Type III restriction enzyme, res subunit 278 434 IPR006935 GO:0003677|GO:0005524|GO:0016787
Trre7g05471 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 673 IPR001650 -
Trre7g05471 766 NCBIfam DNA repair helicase rad25 49 761 IPR001161 GO:0003678|GO:0006289|GO:0006367
Trre7g05471 766 Pfam Helicase conserved C-terminal domain 64 187 IPR032830 -
Trre7g05471 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 710 IPR027417 -
Trre7g05471 766 Gene3D - 461 701 IPR027417 -
Trre7g05471 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 452 IPR014001 -
Trre7g05471 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05471 Trre-Chr7 60474701 60482739 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05471 K10843 - gmx:100789550 1387.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05471 7 60474701 60482739 Trre7g05471 7 60474701 60482739 ECH