Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05465 ATGTCTTCCCCAAGTAAACGCAGAGACATGGATTTGATGAAGCTGATGATGACTGATTATAAAGTGGAAATGATCAATGATGGCATGCAAGAGTTCTTTGTGGAATTTCATGGACCTAAAGACAGTCCTTATCAAGGAGGTGTGTGGAAGATAAGAGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCTTCTATTGGTTTTGTCAACAAAATTTACCATCCTAATGTTGATGAAATGTCTGGTTCGGTTTGCTTAGATGTTATCAACCAGACATGGAGTCCGATGTTTGATCTTGTTAATGTGTTCGAAGTGTTTATTCCTCAACTTCTTATATACCCCAATGCATCAGATCCATTGAATGGTGATGCTGCTGCCTTGATGATGAGAGATCGTGCTGCATATGAACAGAAAGTCAAAGAATATTGTGAAAAATATGCCAAGCCAGAAGATATTGGAGCTCAGGAGGAAATTTCTAGTGATGATGAGCTGAGTGAAGATGGCTACGCCTCTAGTGATGACGGCATTGTTGGCCAACCTGATCCCTAA 549 0.4044 MSSPSKRRDMDLMKLMMTDYKVEMINDGMQEFFVEFHGPKDSPYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFIPQLLIYPNASDPLNGDAAALMMRDRAAYEQKVKEYCEKYAKPEDIGAQEEISSDDELSEDGYASSDDGIVGQPDP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05465 182 CDD UBCc 10 143 IPR000608 -
Trre7g05465 182 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Trre7g05465 182 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Trre7g05465 182 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Trre7g05465 182 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Trre7g05465 182 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Trre7g05465 182 SUPERFAMILY UBC-like 4 148 IPR016135 -
Trre7g05465 182 SMART ubc_7 4 148 - -
Trre7g05465 182 MobiDBLite consensus disorder prediction 151 182 - -
Trre7g05465 182 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05465 Trre-Chr7 60440269 60444314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05465 3 117 Miscellaneous Gene Families AT3G17000 24.390 4.81e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05465 K10576 - gmx:100791133 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05465 7 60440269 60444314 Trre7g05465 7 60440269 60444314 ECH