Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05450 ATGGCTTTGCCATTTGTTACTCTTCCACACTTCATTTCTCCAACAATAATAACTAAACCCAAACACTTTCTTCACCCTTTTCCTTCTACACATTTCTTCCGTCCCTTATCTTCTTATCCTTTACTTCCTCTTCCACCTCCCGCCGCTACACGGCCCAACGCCGCCAAATCCTATCCAAACCCAGCCGACGACGACCCACCCGAAGTACCCGAAGATTCCGCTCACGGCTTCACCAAATTCCAACAAATACAACTCCAAGCCGACCGTGCTCGCAAACGCGAAGAACAAGATTTCAAAGAGAATCAAGCCACTTACCTCGCCGCCATCGCCGACGCCGAAGATGCTCCCGATGAACCTTCCTCTATCGAATCCGCTCAAGAGGATTTGTTCGGTGAAATCGACAAAGCAATTGCTCTTAAGCGTAAAGAGTTCGTTAAACAAGGTCTTCTTAAACCTAATCCCGCCAAAAAGGACATTGAAGTCGTTGATGAGCTTCAACCAGACGAAGTCGATGACGTTGAAGAAATTGAGAAACTCAAGCGATTTGCGGTGAATTCTGACGAAATTCCGGATGATTTCATTGATGAAGATGGTAATTTAGCTTCGAAATCCGAATATTCGTTTGATTTAGATTTTGATAGTTTAGGGAAGAATAATAAAGCTAGAGTAGTTGAACCTAAGTTTAAGATGAGTTTAGCTGAGCTTTTAGATGAGAGTAAGGTAGTTCCTATTTCAGTTTATGGAAATTTGGAAGTTGAAATCAGTGGAATTCAACACGATTCGAGGCTTGTAACTTCTGGTAATTTGTTTGTTTGTTGTGTTGGAAGAAAAAACGATGGACACGCGTTCTTGAGTGAGGCTGATAAGAGAGGAGCTGTTGCTGTTGTCGCGAGTAAAGAGATTGATATCGAAGATACTTTGGGTTGTAAGGCTTTGGTTATTGTGGAAGATACCAATGCTGTTCTTCCTACATTGGCTGCTTCGTTTTATAAGTATCCTTCGACAAATATGGCTGTTATTGGACTAACTGGGACTTATGGCAAAACAACGACTACTTATTTGATTAAAAGTATGTATGAAGCGATGGGTTTACGTACTGGGATGTTTAACTCCATTGCTAGTTATGTGCATGGGGAGAATCAGTTGGATTCGCCCTATGAGATGATGGATGCTGTTTTGGTTCAGAATTTGATGGCTAAGATGCTTCATAATGGAACTGAATCTGTGGTTTTTGAGGCTTCTTCTCGTGGACTGGCTCAGGGGAAATACGATGAGGTTGATTTTGATGTTGCTGTTTTTACGAATTTGTTTACTGAAGAGGATGAGGAGATGGAAAGAGATGCGAAGGCTAAGATGTTTTCGAGGATGGTGGATCCTGAGCGGCATAGGAAAGTTGTTAACATTGATGATCCGAATGCAGTTTTTTTCCTTTCATTGGGCAGTCCTGAAGTTCCTGTTGTGACATTTGCTTTGGAGAATAAAAATGCAGATGTTCATCCCTTGAAGTTTGAACTCTCCCTGTTTGAGACACAGGTTTTGGTTAATACGCCTGCTGGGATACTGGAAATTTCGTCAGGATTATTAGGAAAGCATAGTGTTTACAACATTCTTGCTGCTGTGGCAGTTGGCATTGCTGTTGGGGCACCCTTGGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGGAGGTGTGTTTTAATTGATGAGGAACAAGCATTTGGGGTAATAGTGGATTATGCTCGTACTCCTGATGCCTTGTCTAGATTACTTGATTCTGTAAGAGAGCTTCAACCTCGCAGGATTATAACTGTGATTGGTTGTTGTGGTGAGGATGAAAGGGGGAAGAGACCCTTGATGACAAAGATAGCGACAGAAAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAGGGTGAAGATCCATTGGATATTTTGGATGACATGTTGGCTGGGATAGGATGGACGATGCAAGAGTACCTGAAATATGGAGAGAATGACTACTATCCTCCTCTTCCAAATGGTCATAGGCTTTTTCTCCATGACATAAGGAGAGTAGCTGTGCGAGCTGCAGTTGCAATGGGGGAGGAGGGTGATGTTGTTGTGATTGCTGGCAAAGGCCACGAAACATATCAAATAGAAGGTGAAAAGAGGGATTTCTTCGATGACCGAGAAGAATGCAGGGAGGCATTGCAGTATGTTGACGACCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGCCACTAA 2277 0.4295 MALPFVTLPHFISPTIITKPKHFLHPFPSTHFFRPLSSYPLLPLPPPAATRPNAAKSYPNPADDDPPEVPEDSAHGFTKFQQIQLQADRARKREEQDFKENQATYLAAIADAEDAPDEPSSIESAQEDLFGEIDKAIALKRKEFVKQGLLKPNPAKKDIEVVDELQPDEVDDVEEIEKLKRFAVNSDEIPDDFIDEDGNLASKSEYSFDLDFDSLGKNNKARVVEPKFKMSLAELLDESKVVPISVYGNLEVEISGIQHDSRLVTSGNLFVCCVGRKNDGHAFLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLPTLAASFYKYPSTNMAVIGLTGTYGKTTTTYLIKSMYEAMGLRTGMFNSIASYVHGENQLDSPYEMMDAVLVQNLMAKMLHNGTESVVFEASSRGLAQGKYDEVDFDVAVFTNLFTEEDEEMERDAKAKMFSRMVDPERHRKVVNIDDPNAVFFLSLGSPEVPVVTFALENKNADVHPLKFELSLFETQVLVNTPAGILEISSGLLGKHSVYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCVLIDEEQAFGVIVDYARTPDALSRLLDSVRELQPRRIITVIGCCGEDERGKRPLMTKIATEKSEVTMLTSDNPKGEDPLDILDDMLAGIGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVIAGKGHETYQIEGEKRDFFDDREECREALQYVDDLHQAGIDTSEFPWRLPESH 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05450 758 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 252 735 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Trre7g05450 758 SUPERFAMILY MurD-like peptide ligases, catalytic domain 333 560 IPR036565 GO:0005524|GO:0009058
Trre7g05450 758 PANTHER MUR LIGASE FAMILY MEMBER 179 744 - -
Trre7g05450 758 Gene3D - 231 331 - -
Trre7g05450 758 Pfam Mur ligase family, glutamate ligase domain 563 646 IPR004101 GO:0009058|GO:0016881
Trre7g05450 758 MobiDBLite consensus disorder prediction 44 74 - -
Trre7g05450 758 SUPERFAMILY MurE/MurF N-terminal domain 230 333 IPR035911 -
Trre7g05450 758 Pfam Mur ligase middle domain 343 542 IPR013221 GO:0005524|GO:0009058|GO:0016881
Trre7g05450 758 Gene3D - 568 745 IPR036615 GO:0009058|GO:0016881
Trre7g05450 758 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 568 741 - -
Trre7g05450 758 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 230 734 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Trre7g05450 758 Gene3D - 333 566 IPR036565 GO:0005524|GO:0009058
Trre7g05450 758 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 563 735 IPR036615 GO:0009058|GO:0016881
Trre7g05450 758 Pfam Mur ligase family, catalytic domain 253 330 IPR000713 GO:0009058|GO:0016881
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05450 Trre-Chr7 60357682 60361131 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05450 - - gmx:100776096 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05450 7 60357682 60361131 Trre7g05450 7 60357682 60361131 ECH