Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05419 ATGGAGGAACCTTCAGCACCAAATCCATCATGCTGGAGCAATATAGTGAAGAAGGAGGCACCGCCACCTCAACAACCACAACCACTTTTACAGACCGAACAAGTTTTGGAAGATGCACGTAACCGTCACGGGATTTCCGTTGCTATTGTTGATGCCAATGCCGTTATTGCAGCCGGTGAAAAGCTTCACGGTATTGCCGATAAGTTTGTTTCTGTACCGGAAGTCATGGAGGAAATCCGTGACCCTGTTTCTCGCCATAAGCTCTCGTTTCTTCCCTTTACTATCCAAACCATGGAACCAACCCCTGAATCTATCAACAAAGTTATCAAATTTGCTAGAATTACTGGTGATCTACAGACTCTATCAGATGTGGATATCAAACTCATGGCTCTAACTTATACTTTGGAGGCTCAAATTCATGGAACAAAACATCTCAGGGACACCCCACCTCCAGTGCAAATGCTAAATGTGAAGAGGTTGCCCGAGAAGGACATGCCCGGATGGGGTTCGAATGTTCCTAATTTGGAAGAGTGGGAAGCATTGGAACGTGAAACTGAGGACAATGCAAATTCCAATTCAAGAATCCTTCCTTTGCAAGACTTGAGTTTGAACGTTGTTCCTCAAGATGATCATCAATCTGTAGTTGGTTCAGTAGAGCATATGGGTGAAAGTCCTTTGGAAATTCCGGAGGTTGATGAAATTAGTGGTTCAATGAGGCGCAAGAATTATATACCTGAGAAGAAGGTGATAAACATTGAAGGGAAGATGGTGGCTGATGGAATTGATGTATCTCAAGGACAAGTTGATGAAAATGAAGGTGATTGGATGCCTGCTGTGAGTCGTAGTACTCACAGGAGATTTCTAAGAAGGAAAGCTAGACGTGAATACTATGATGCATTATCCAGTACTCAAGATCAACAAGACGTGGAAGAAAACATCGATGGTAGTGTTAATGAAGATGATAAGGCTTCAAACCATGATATTCCTCAAAGTAATGATGAGAAGCATATTGAAAATGTTGTTTCCAAGAAGGATGTGATATTTGCAGAGAACACTGATGGTGAAGCTCTCTCTGCAACTCTGAAGCAAATGACTCTGGAAAGTGCATCAGATGGTAGTGCACCTATGGCTGCTAAATCATGTGAGACAGATTCAGTCAATGACAAAGCAAATCACTCGGAGATTGCAAGCCCGACCAGTGAAGCTGCTGATGTTTCATATGCAGATGATGACGTCAGCGAGCAAAGTTGGATGCTTAGATCTTTGTCCGAATCAACTGTGGCCTGTATAACTGGTGACTTTGCAATGCAAAATGTTCTCCTCCAAATGGGTTTGCGCTTGGTGGCACCTGGAGGATCACAGGTACACGAGCTGCACAGATGGATACTTAAGTGTCATGCCTGTTTTGCTGTTACTGCTGAAATTGGGAGGATTTTCTGTCCAAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCTGTCACTGTTAATGAAAATGGAGTAATGTTGGCAGCCCGTCGACCCCGAGTTACATTACGTGGCACCAAGTTTTCATTGCCATTACCCCAAGGTGGAAGGGATGCAATGACAAAAAACATCATTCTCCGTGAAGATCAACTACCTCAAAGGGTACTTCATCCTAAAACAAGGAAGAAAGCCAACAAGGATGATGATTGCTTTCTGCCGGACAATGTCTTCAGCCACCACAATTATAAGGGAACTCCTTTCTCGCCTCCTGTAAGGAAAGCATTAGCAATGTTCAGTGGGAAGAGAAATCCAAATGACAATCACCACTCACGCTCGCGTAAGTAG 1812 0.436 MEEPSAPNPSCWSNIVKKEAPPPQQPQPLLQTEQVLEDARNRHGISVAIVDANAVIAAGEKLHGIADKFVSVPEVMEEIRDPVSRHKLSFLPFTIQTMEPTPESINKVIKFARITGDLQTLSDVDIKLMALTYTLEAQIHGTKHLRDTPPPVQMLNVKRLPEKDMPGWGSNVPNLEEWEALERETEDNANSNSRILPLQDLSLNVVPQDDHQSVVGSVEHMGESPLEIPEVDEISGSMRRKNYIPEKKVINIEGKMVADGIDVSQGQVDENEGDWMPAVSRSTHRRFLRRKARREYYDALSSTQDQQDVEENIDGSVNEDDKASNHDIPQSNDEKHIENVVSKKDVIFAENTDGEALSATLKQMTLESASDGSAPMAAKSCETDSVNDKANHSEIASPTSEAADVSYADDDVSEQSWMLRSLSESTVACITGDFAMQNVLLQMGLRLVAPGGSQVHELHRWILKCHACFAVTAEIGRIFCPKCGNGGTLRKVAVTVNENGVMLAARRPRVTLRGTKFSLPLPQGGRDAMTKNIILREDQLPQRVLHPKTRKKANKDDDCFLPDNVFSHHNYKGTPFSPPVRKALAMFSGKRNPNDNHHSRSRK 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05419 603 PIRSF Nob1 31 603 IPR017117 GO:0000469|GO:0004521|GO:0042274
Trre7g05419 603 Gene3D - 39 149 - -
Trre7g05419 603 PANTHER RNA-BINDING PROTEIN NOB1 33 601 IPR039907 -
Trre7g05419 603 Pfam Nin one binding (NOB1) Zn-ribbon like 455 525 IPR014881 -
Trre7g05419 603 MobiDBLite consensus disorder prediction 1 29 - -
Trre7g05419 603 CDD PIN_Nob1-like 49 160 IPR033411 -
Trre7g05419 603 SUPERFAMILY NOB1 zinc finger-like 455 518 IPR036283 -
Trre7g05419 603 FunFam 20S-pre-rRNA D-site endonuclease NOB1 39 159 - -
Trre7g05419 603 Pfam PIN domain of ribonuclease 49 135 IPR033411 -
Trre7g05419 603 Gene3D - 449 523 IPR036283 -
Trre7g05419 603 MobiDBLite consensus disorder prediction 316 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05419 Trre-Chr7 60172586 60177025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05419 K11883 - gmx:100800291 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05419 7 60172586 60177025 Trre7g05419 7 60172586 60177025 ECH