Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05372 ATGCTTCTCTTTCATGAACTCTTGGACCTTATAGTTCCCCCTCTATGCCTAATTTTCCTGCTCTGTATTTTACCACCTTATCTATTATTCAAGATTGTCTACTTCTTCATAAGATCAATGTTTAGTGAGAACGTAGCAGGAAAAGTAGTACTCATCACTGGGGCCTCCTCTGGCATAGGCGAGCATCTAGCATATGAGTATGGTAAGAGAGGAGCACGCCTAGCTCTTGTTGCCAGAAGAGAGAATCGACTCAAGGAGGTTGCTAGCAAAGCTAAGTCCTTTGGGTCCCCTGAAGTCATCACCATCCCAGCAGATGTTTCATGTGTCCAAGACTGTAAACGTTTTGTTGACTTAACATTCAACCATTTTGGACAATTGGATCATTTGGTGAACAATGCAGGAATAGTTCCTCTTAGCTTATTTGAAGACACGACTGATATCACTAATTTTGCACCCGCTATGGACATTAACTTCTGGGGTTCTGCATACGGCACATATTTTTCAATCCCCCATCTAAGAAAATCCAAAGGTAAGATCATAGCCATAGCTTCCTCAGCTGGATGGTTGCCTGCTCCAAGAATGATGTTCTACAATGCAAGCAAAGCAGCAGTGATTAGCTTATATGAGACCCTAAGAACTGAACTGGGAAAGGACATAGGAATAACTATAGTTACACCAGGGTTGATTGAATCAGAAATGACCCAAGGGAAGTTCCTATCTAAGGAAGGCCAAATGGTTCTTGACCAAGAAATGAGAGATGTTCAAGTTAGTGTGGTGCCCATAAGATCAGTCACAGAAGCTGCCAAAGGAATTGTGAATGGCGCTTGTCGTGGAGACTCTTACTTGACAGAACCAGCATGGATTAGGACTACCTTCTACTGGAAGGTGTTCTGCCCTGAAGTATTGGAGTTTTTAAACCGTTGGTTGCTACTATCAGGGTCTTCAGAGAGGGAAACAATTAGCAAGAAGCTCATAAATCTACCAGGCTTAAAGAAATATGTGTATCCTGAGTCAGTTAGAAATCCCAAGATCAAGCCCAACTAA 1044 0.4234 MLLFHELLDLIVPPLCLIFLLCILPPYLLFKIVYFFIRSMFSENVAGKVVLITGASSGIGEHLAYEYGKRGARLALVARRENRLKEVASKAKSFGSPEVITIPADVSCVQDCKRFVDLTFNHFGQLDHLVNNAGIVPLSLFEDTTDITNFAPAMDINFWGSAYGTYFSIPHLRKSKGKIIAIASSAGWLPAPRMMFYNASKAAVISLYETLRTELGKDIGITIVTPGLIESEMTQGKFLSKEGQMVLDQEMRDVQVSVVPIRSVTEAAKGIVNGACRGDSYLTEPAWIRTTFYWKVFCPEVLEFLNRWLLLSGSSERETISKKLINLPGLKKYVYPESVRNPKIKPN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05372 347 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Trre7g05372 347 PANTHER RETINOL DEHYDROGENASE-RELATED 46 313 - -
Trre7g05372 347 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Trre7g05372 347 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Trre7g05372 347 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Trre7g05372 347 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Trre7g05372 347 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Trre7g05372 347 Gene3D - 37 310 - -
Trre7g05372 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Trre7g05372 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Trre7g05372 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Trre7g05372 347 Pfam short chain dehydrogenase 48 237 IPR002347 -
Trre7g05372 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 309 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05372 Trre-Chr7 59816258 59817762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05372 48 242 Acyl Lipid Metabolism Gene Families AT3G55310 32.381 4.63e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05372 K22418 - gmx:100787835 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05372 7 59816258 59817762 Trre7g05372 7 59816258 59817762 ECH