Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05325 ATGTCTAGGGTTTTGGCGCAGTCGATTAATATCCCCGGTCTAGTGGCTGGTCGAAGACATGACAATAACAGCAAGGGATCCGTGAGACCAAGAAGGTCTGTTAGAATGATGTATGCAACACGGACTGTTGCACCGAGATTGACTGCTAGTTTCTCTGGTTTGAACTCTTTGGATTCTATGTTGAGACCAGGACAAGCTTTTCATTCTAAGGTGCTTACTCAAATCGGAGGTACTAGTAGACCAAGGCTTGGCAGAGGTAACAGATGTGTAACAAGAGCTATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTTATTATGTTGGCTCAGGAGGAAGCAAGGCGGCTAGGACACAATTTTGTTGGAACTGAACAGATTCTGTTGGGTCTTATTGGTGAAGGCACCGGCATTGCTGCTAAGGTTTTAAAGTCTATGGGAATTAACCTAAAAGATGCACGTGTGGAAGTGGAAAAGATAATTGGACGGGGTAGTGGTTTTGTTGCCGTTGAGATTCCGTTTACTCCTCGTGCCAAACGGGTTTTAGAACTCTCACTTGAGGAAGCTCGTCAACTTGGTCACAATTATATCGGATCTGAGCACTTGCTTTTGGGTCTTCTTCGAGAGGGTGAGGGTGTGGCAGCACGTGTCATTCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGGGCAACTGTTGGCTCTGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAATATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATCTTGGGTCGTCGTACAAAAAATAATCCTTGTCTTATTGGTGAACCCGGTGTGGGAAAGACAGCTATTGCTGAAGGTCTCGCTCAAAGGATTGCAAATGGTGATGTCCCTGAAACCATAGAGGGAAAGAAGGTCATAACCCTAGATATGGGTCTACTTGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAAATCAAACAAAGTGACGAAATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCCGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACAACACTAGATGAATATAGGAAGCACATTGAAAAAGATCCTGCATTGGAGAGGCGATTCCAACCAGTTAAAGTGCCAGAACCAACTGTGAGTGAAACCATACAAATTCTGAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACCGATGATGCTCTTGTAGCTGCTGCAGAGCTGTCACATCAATATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTCCGACTTCAACATGCACAGTTACCCGAAGAAGCAAGAGGTCTTGAAAAGGAGCTTAGGCTGATAATCAAGGAGAAAGATGAAGCTGTTCGCAACCAAGAATATGAAAAGGCTGGAGAGCTACGGGATAAAGAAATGGATCTTAAGACTCAGATATCAGCACTTATTGAAAAAAACAAGGAGATGAACAAGGCTGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTCGCTGCCTGGACTGGTATCCCTGTTGACAAAGTCTCGGTTGACGAGTCTGACCGCCTTCTCAAGATGGAAGAGACCTTACACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGGGCTATCCGTCGAGCACGTGTTGGACTTAAGAATCCTAACCGGCCAATAGCCAGCTTCATCTTTTCTGGTCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACATTGGCCTCATACTACTTTGGATCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTCTCCAAACTCATTGGTTCACCTCCCGGCTATGTTGGTTATACCGAGGGTGGTCAACTGACTGAGGCAGTTCGTCGTCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTCTTCAACATGATGCTTCAAATCTTGGAAGATGGAAGGCTAACTGATAGTAAGGGAAGAACTGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTTATTGAGAAAGGAGGCCGTCGCATAGGATTTGACCTTGACTATGATGAGAAGGACAGCAGTTATAACAGAATCAAGAGCTTGGTGACAGAGGAGTTGAAGCAATACTTCAGGCCAGAGTTCTTGAATAGGCTGGACGAAATGATTGTTTTCAGGCAACTCACAAAACTTGAAGTTAAGGAGATAGCTGATATAATGTTGAAGGAGGTGTTTGAGAGACTGAAAGTCAAAGAGATTGAGCTTTCAGTGACAGAGAGATTTAGGGAGAGAGTTGTCGACGAAGGTTATAATCCCAGTTATGGGGCCAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTTCCAGGGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCTGATTCCGATGGAAATGTGATTGTTCTCAATGGTAGCAGTGGTGCTCCAGATTCATTGTCAGAAGCTCTTCCAGTGTAG 2733 0.4468 MSRVLAQSINIPGLVAGRRHDNNSKGSVRPRRSVRMMYATRTVAPRLTASFSGLNSLDSMLRPGQAFHSKVLTQIGGTSRPRLGRGNRCVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGEGADSVGATVGSGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKELRLIIKEKDEAVRNQEYEKAGELRDKEMDLKTQISALIEKNKEMNKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEETLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLSREIKEGDSVIVDADSDGNVIVLNGSSGAPDSLSEALPV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05325 910 Gene3D - 426 569 - -
Trre7g05325 910 ProSiteProfiles UVR domain profile. 497 532 IPR001943 GO:0005515
Trre7g05325 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 889 IPR027417 -
Trre7g05325 910 PANTHER ATP-DEPENDENT CLP PROTEASE 99 890 - -
Trre7g05325 910 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 672 690 IPR001270 GO:0005524
Trre7g05325 910 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 701 719 IPR001270 GO:0005524
Trre7g05325 910 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 734 748 IPR001270 GO:0005524
Trre7g05325 910 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 627 645 IPR001270 GO:0005524
Trre7g05325 910 Coils Coil 529 549 - -
Trre7g05325 910 ProSitePatterns Chaperonins clpA/B signature 2. 657 675 IPR028299 -
Trre7g05325 910 Pfam Clp amino terminal domain, pathogenicity island component 109 161 IPR004176 -
Trre7g05325 910 Pfam Clp amino terminal domain, pathogenicity island component 185 223 IPR004176 -
Trre7g05325 910 Coils Coil 493 513 - -
Trre7g05325 910 CDD RecA-like_ClpB_Hsp104-like 584 800 - -
Trre7g05325 910 CDD AAA 263 415 - -
Trre7g05325 910 Pfam ATPase family associated with various cellular activities (AAA) 285 401 IPR003959 GO:0005524|GO:0016887
Trre7g05325 910 Pfam C-terminal, D2-small domain, of ClpB protein 803 883 IPR019489 -
Trre7g05325 910 FunFam ATP-dependent Clp protease ATP-binding subunit 424 507 - -
Trre7g05325 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 527 IPR027417 -
Trre7g05325 910 SMART AAA_5 623 804 IPR003593 GO:0016887
Trre7g05325 910 SMART AAA_5 280 420 IPR003593 GO:0016887
Trre7g05325 910 Gene3D - 803 900 - -
Trre7g05325 910 Gene3D UVR domain 489 547 - -
Trre7g05325 910 Coils Coil 334 354 - -
Trre7g05325 910 FunFam Chaperone clpB 1, putative 231 423 - -
Trre7g05325 910 Pfam AAA lid domain 424 525 IPR041546 -
Trre7g05325 910 Gene3D - 233 423 IPR027417 -
Trre7g05325 910 SMART ClpB_D2_small_2 803 893 IPR019489 -
Trre7g05325 910 Pfam AAA domain (Cdc48 subfamily) 622 796 IPR003959 GO:0005524|GO:0016887
Trre7g05325 910 Gene3D - 576 801 IPR027417 -
Trre7g05325 910 SUPERFAMILY Double Clp-N motif 96 206 IPR036628 -
Trre7g05325 910 Gene3D - 94 232 IPR036628 -
Trre7g05325 910 FunFam ATP-dependent chaperone ClpB 803 895 - -
Trre7g05325 910 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 94 234 - -
Trre7g05325 910 ProSitePatterns Chaperonins clpA/B signature 1. 375 387 IPR018368 GO:0005524
Trre7g05325 910 ProSiteProfiles Clp repeat (R) domain profile. 95 238 IPR004176 -
Trre7g05325 910 FunFam ATP-dependent Clp protease subunit 576 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05325 Trre-Chr7 59478425 59482919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05325 K03696 - gmx:100804035 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05325 7 59478425 59482919 Trre5g04738 5 49265612 49271440 PCT