Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05181 ATGAAAGGTGGAACGGTTCAGATTAACTGGCACGAAAGCAAACCCGTTTTAACCCTAGATTTCCATCCTCTCTCCGCCACACTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTATGGTCAATTAAACCCTCCGGAGCACAGAAGAAGCTTCCAGAAGTTACTTATGTCAATAGTCTCTCTTATCATAGTTCCGCTGTTAATGTTATTCGCTTCTCTTCTTCCGGTGAACTTTTAGCTTCTGGGTCTGATGGAGGTGAATTGTTAATATGGAAGCTACATTCTACTGATACTGGCCAAACATGGAAGGTTCTCAAGATGTTACGATCTCATATCAAGGACATTATGGACCTGGAGTGGTCTACTGATGCTGCATATATCATATCTGGATCAGTTGATAATTCTTGCATCATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATACTCATGCACACTATGTTCAGGGGGTAGCATGGGACCCTTTAGGGAAGTATGTTGCTTCTCTTAGTTCTGACCGTACTTGCCGAATTTACACCAGTAAGCCCCATAAATCAAAGGGGGTTGAGAAAATCAATTATGTTTGCAAGCATGTTATTTCCAAGGCCGAACAGCCATTATTAAAGAATTCTAAGTCTACAAAATATCATCTTTTCCACGATGAAACATTGCCCTCTTTCTTTAGAAGATTAGCCTGGTCTCCAGATGGTTCATTTCTACTTGTTCCTGCAGGTTCTTATAAGATCGGTACTGCATCTGAATCTGTAAACACAGCTTACATATTTTCCAGAAAAGATCTTTCTCGGCCTGCCATACAGCTTCCTTGTGCAAGCAAAGCTATTGTAGCTGTCCGGTTCTGTCCTATATTTTTTATCCTTAAGGGAACAAACTCAGATGGGTTATTTAAGCTCCCATATCGCATTGTATTTGCCGTAGCCACATTGAATTCATTGTACATTTATGATACTGAGAGCACTTCTCCATTAGCTATATTTGCTGGTCTTCACTATGCTCCAGTAACAGATATTACCTGGTCACATGATGCCCGTTATTTGGCATTCTCCTCGCAAGATGGTTTCTGCTCTTTGGTAGAGTTTGAAGATGGCGAACTTGGATCACCTTACTGTTTATCAAAAGGAAATGTCTCAGACAGCGATAGTAAAAGCACCCTGCAGACAGCCAACGACGCTGTACTACCAACTGCGAGTGTTGGTGCAGTTGCAGCAGAAAGCAGGAAAATAGAAGCAGAAGAAAAGGTTGATGACATGGACATAGAAACATCTAGGGATATTGGTGCAGTCACATCAGAAGGCAGCAAAACTGTAACTCAAGATAAGGCCGAGGACATGATCATCAAGTCAACTGGGAATGTTAGTGCAGTCATAGCAGATAATAGGAAAAATGAAGCACGGCATAAAGCAGATGACATGGTCATTGAAGGAGGTACAGCAGATAGTATGAAAAGGGATGCAGAAGAGAAGACTGATGACATGATCATTGATACAAATGGGACTGCGAATATTGCAGCAGCTCTATTAGATAATAGAGAAACTGAAGATGCTACAGCAAAACAGGTTAGTAGTTCAGGTAGTGTTAATTTTGGAGCAGAAGAGAATGCATTGAAACAACCAATTAATCCAGACAGTAAACAAAGTGAAGAAGAAATGAAGGCAGATAAACCGCAATCAACTTTAGATGGCATAAAATCAAGGCCAGAAGAGAAAACAGGGAATCAGTTGTCTGGTTCAAAGAACACACCCATATCAAATAAGCCAGCCAGGAAGCGCATTACTCCTATAGCAATTGATCCATGA 1821 0.4146 MKGGTVQINWHESKPVLTLDFHPLSATLATAGADFDIKLWSIKPSGAQKKLPEVTYVNSLSYHSSAVNVIRFSSSGELLASGSDGGELLIWKLHSTDTGQTWKVLKMLRSHIKDIMDLEWSTDAAYIISGSVDNSCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYVASLSSDRTCRIYTSKPHKSKGVEKINYVCKHVISKAEQPLLKNSKSTKYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKIGTASESVNTAYIFSRKDLSRPAIQLPCASKAIVAVRFCPIFFILKGTNSDGLFKLPYRIVFAVATLNSLYIYDTESTSPLAIFAGLHYAPVTDITWSHDARYLAFSSQDGFCSLVEFEDGELGSPYCLSKGNVSDSDSKSTLQTANDAVLPTASVGAVAAESRKIEAEEKVDDMDIETSRDIGAVTSEGSKTVTQDKAEDMIIKSTGNVSAVIADNRKNEARHKADDMVIEGGTADSMKRDAEEKTDDMIIDTNGTANIAAALLDNRETEDATAKQVSSSGSVNFGAEENALKQPINPDSKQSEEEMKADKPQSTLDGIKSRPEEKTGNQLSGSKNTPISNKPARKRITPIAIDP 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05181 606 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Trre7g05181 606 MobiDBLite consensus disorder prediction 524 538 - -
Trre7g05181 606 MobiDBLite consensus disorder prediction 550 575 - -
Trre7g05181 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Trre7g05181 606 Pfam WD domain, G-beta repeat 59 92 IPR001680 GO:0005515
Trre7g05181 606 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Trre7g05181 606 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Trre7g05181 606 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Trre7g05181 606 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Trre7g05181 606 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 606 IPR045145 GO:0006335
Trre7g05181 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Trre7g05181 606 Gene3D - 227 405 IPR015943 GO:0005515
Trre7g05181 606 SMART WD40_4 2 41 IPR001680 GO:0005515
Trre7g05181 606 SMART WD40_4 143 182 IPR001680 GO:0005515
Trre7g05181 606 SMART WD40_4 327 367 IPR001680 GO:0005515
Trre7g05181 606 SMART WD40_4 53 92 IPR001680 GO:0005515
Trre7g05181 606 SMART WD40_4 101 140 IPR001680 GO:0005515
Trre7g05181 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Trre7g05181 606 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Trre7g05181 606 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Trre7g05181 606 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Trre7g05181 606 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Trre7g05181 606 SUPERFAMILY WD40 repeat-like 13 394 IPR036322 GO:0005515
Trre7g05181 606 MobiDBLite consensus disorder prediction 576 594 - -
Trre7g05181 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Trre7g05181 606 Gene3D - 4 193 IPR015943 GO:0005515
Trre7g05181 606 Coils Coil 408 428 - -
Trre7g05181 606 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Trre7g05181 606 MobiDBLite consensus disorder prediction 521 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05181 Trre-Chr7 58382325 58386901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05181 25 181 Miscellaneous Gene Families AT5G08390 26.582 1.64e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05181 K10751 - gmx:547606 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05181 7 58382325 58386901 Trre7g05181 7 58382325 58386901 ECH