Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05166 ATGGATTCAGATCTCAAATCGGCCAAATCCGCTTACAATAACGCCCATGCCGAGGGTAACCACCGTGAAGAAGCTCGCTGGGCAAACGTCATCGGCGATATACTCAAGAACAGAGGAGAATACGTTAAAGCCCTCAAATGGATCCGAATCGATTACGATGTTTCTCTCAAATACTTACCGGAGAAACACTTGCTCACAACTTGTCAATCCCTCGGTGAAATCTATCTCCGTCTCGAGCGTTTTGACGAAGCCCTAAAATTCCAGAAAAAACATTTAGATCTTGCGAGGGATGCTGATGATCTTGTTGAGCAACAACGAGCTAGCACGCAGCTAGGTCGAACTTACTATGAACTGTTTTCGAGATCAGAACATGATCACAAATCAATTCGCAATGCGAAGAAGTATTTCAAGAGTGCAATGGATTTGGCGGTTACTCTTAAAGAGAATCCGCCAAATGGTAAGTCTTCGTTTCTCAAGGAATATATTGATGCTTATAACAATATAGGAATGCTTGAAATGGATATCGATAACTTGCACGAGGCGCAGAAGATACTTACTAAAGGATTGGAGATTTGTGATGAAGAGGAGATTGGCGAGTTTGATGATGGGCGTAGTAGGTTACATCATAATCTTGGGAATGTTTATATGGAATTGAGGATGTGGAATGAAGCTAGGAAGAATATTAAGAAGGATATTTTGATTTGTCATAAAATTGGACATTGTCAAGGAGAAGCAAAAGGGTATATTAATCTTGGTGAAATGCATTACCGGACTCAAAAGTACGACGAAGCACGGTCTTTTTATGAGAAGGCGCTTGGTTTGGCAAAGTCTTTGGAGGATGAGGATGCTTTGGTCAGACAGATTAATCAGAATATTGAAACTGTTAAATCTGCTGTTAAAGTTATGGACGAAATCAAGAGAGAAGAGCAGAAACTTAAAAAACTCAAGAGAGATATAGTTTCAGCCAGAGGGACACTGCACGAGCGTAAGTATCTGCTGCAGCAAAACGGGTCTCTTGAAATCCTTGTTGAGAAAGCAAGGATGATATCGGCTTGGGAGAAGCTTTGTGAATTTGCAAAGGAGAAGAAGAAAGTAGCAAGTGACCTTTGTGACAAGCAAAAGTTGGGTGATTCATATCTGGATGTTGCAGATTCATACCAGAAGCTCAGAAAATTCAACAAGGCAATCAAATGGTACAAAAAGAGTTGGGAAATGTACAGGACAATTGGTAACTTAGAGGGGCAAGCACTGGTGAAAATTAATATCGGTAATGTTTTGGATTCTACTTACAATTGGAGAGAAGCACGTGATGCATATAAAGAGAGCCACAGGATTGCTGTTGAAGCAAACCTTCCTGGTCTACAGCTTTCTGCCTTGGAAAATATGCATTATATCAACATGATCAGATTTGATGATGAGGATGAGACCGGGAGGTTGAAACAACTAATTGATGAGCTTAAGAAGTCAAGTGAAGAGCAAGAGGCTAATAGTATGCCAGGGGATTGTTGCTCTGAGACTGATACTGAAGCAGATGTTTGTATATCAAATAGTGAGTCAGATGATTTTTGCTTTCCAAAGACAACTTATAAATCAGAAACCCCGACTCCTGAAGAAGAATTGAATGATGATAATGTGCCTCTTATGTCTCTATATCAGTCCATTAAAGGCTCGTCTGGAAAGATAACAGGTCACAAGGGAAGTCATACTAACTCTACAAAGCAGGTTGAGCAATCACCCAGAAGTCTGACAAAACTAACAGGCGAGAATCAAGCAGTTGTTGGTCGTAAACGTGTCCGTGTGATTCTTTCCGATGACGATGATGATGAGATGGAATGCTCAAGCAGAAAGGATCAGGACTGCCCGTTAGAGAACTTGCCTAATTATGAAGCAATTAAGAGTAAAATCAGTCCTAGTAAAATTCAGGTTGTCCCAGAGTATGGATCTAAACGTGCAATTAATGTTGAAGAAAGTAGCAGTTCCTTCAAATGCTGGAGTCCAAATACTGCAACTAAAACTTCCAGACGTTCCAGGTCATTGAGCAATGATATAGTTGTTGTAACCGACTTTCATAGTGGTTCTAAATGTGATACAGATGTCTCTGGCAAACAAAATGTTGTTGCCCATCCCATGACACATCATTCCCATGATGATCAATATATTGCATGTCGGATTGAGAATGATATAGTTTATGTAGAAGCAGCCTTGTGCTCTGCTGGTGATCAGTTTGACATTGACTCGTTAAAGGCTGTAATTGCATGCCTATACTATCAACAATTTCCGACAGAAAAGAAATCAGAGGGTTTGTTACCCATTATTCAGCACATAAAATGTGCTGGAAGAGATCTAGAATCGCTGGCAACTGTTGAAAATCTTAAGGAGCATCTGCGAAATAACATGGTTGAAGCTTTGATTGACGGATGGATTCAGAAGCGCCTAATAAAAACGTACGTAGACTGCTGCAAGGAGTTGTCTGAGGTACCAAAGATCAAGGTGCTGAAGAAACTTTACAATTTAGAGGTTTCTGATGATGAAATCATTGCATCGGACTGTGACCTGCAAGATTTGTCTATAACACCATTGATAGATGCACTGCATTCCCAAATGGCATTTTCAATGCTTGACATCTCTCACAATTGTTTAGGAAATGGAACAATGGAGAAACTTCGAAAGGTGTTCACAGCATCGGGTCAATCTTACGGCTGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACAACTTTGTTTCAGATTTGTGAATGCTCTGTGCTATTTGCTCGACTCGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCAACAATCTTAAAAAACTGTACAGCTCTTTGTAGCTTGAATGTAGAGAACTGTTGTATAACAACCAGAACCATTCAAAAAATTGCTGATGCATTGGACTCTAGTTCTGTGCTTTCACACCTTTGCATAGGACACAACAGTCCTGTATCTGGGAATGCTTTAGTTAATCTTCTATCGAAGCTTTCTACTTTAAAAAGGTTTTCCGAGTTAAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTCGATAGCCTTTGCCAGCTTGCAGGGACCTTGGCTTTATCAGGACTAATACTTGGAGGCACTGGTATTGGAAATGAAGGGGCCATAAAAGTAACAGAAGCATTGCTCAAAGGGACCGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGGTTAACATGTGACTATATTTTAAGCATCAATGTTAATTCTTTTTGCTCCATCACTGAGCTGAGCCTGGAAGGAAATCCTATACTGCTTGAGGGCAGCAATACTCTATTTCCGCTTCTCATAAACCCACAGTGCTGTCTCAAAGTTTTGATACTCAGGAAGTGTCAACTTGGGCGTGCTGGAGTTCTTCACATAATCGAGGCTCTTGCAGATAACAGCAGCCTGGAGGAGCTTAACCTTGCTGATAATTCTGTTCCGACTGAATTTTCTGCTCTACAATGTGAGTTACCATCTAAAAGCTGCTCACAGAACCAGGAGGATAAACTTGATACTATGAAAGTGGATGATAATCAAGAGGCCTTTGGCTCTCTAAATACTTTGGACGAACAGCTGGAAGTTGCTGATAGTGAAGATATTCCAGGTGGAGCAGAAGCTGCTGCTTCTGGAATTGACGACAGTGCCAGTTCATGTCAAAGAAATTCAACGCCCGAGTGCAATTTAACTCAGCAATTTTCAAGTGCTATTGCAAAGGCAAAGAACTTGCAATTACTAGACCTTAGCGATAATAGTTTTTCTGCACAAGCTGCAGAAACATTCTATGGTTCGTGGACAACTTTACGACCCCTTTCAAGTCACAGGCATATCACTAAGAACATTATTCATTTCTCAACAAAGGAAAAGAAATGCTGCAGCGTTAAACTTTGCTGTAAGAAAGTTTGA 3954 0.4052 MDSDLKSAKSAYNNAHAEGNHREEARWANVIGDILKNRGEYVKALKWIRIDYDVSLKYLPEKHLLTTCQSLGEIYLRLERFDEALKFQKKHLDLARDADDLVEQQRASTQLGRTYYELFSRSEHDHKSIRNAKKYFKSAMDLAVTLKENPPNGKSSFLKEYIDAYNNIGMLEMDIDNLHEAQKILTKGLEICDEEEIGEFDDGRSRLHHNLGNVYMELRMWNEARKNIKKDILICHKIGHCQGEAKGYINLGEMHYRTQKYDEARSFYEKALGLAKSLEDEDALVRQINQNIETVKSAVKVMDEIKREEQKLKKLKRDIVSARGTLHERKYLLQQNGSLEILVEKARMISAWEKLCEFAKEKKKVASDLCDKQKLGDSYLDVADSYQKLRKFNKAIKWYKKSWEMYRTIGNLEGQALVKINIGNVLDSTYNWREARDAYKESHRIAVEANLPGLQLSALENMHYINMIRFDDEDETGRLKQLIDELKKSSEEQEANSMPGDCCSETDTEADVCISNSESDDFCFPKTTYKSETPTPEEELNDDNVPLMSLYQSIKGSSGKITGHKGSHTNSTKQVEQSPRSLTKLTGENQAVVGRKRVRVILSDDDDDEMECSSRKDQDCPLENLPNYEAIKSKISPSKIQVVPEYGSKRAINVEESSSSFKCWSPNTATKTSRRSRSLSNDIVVVTDFHSGSKCDTDVSGKQNVVAHPMTHHSHDDQYIACRIENDIVYVEAALCSAGDQFDIDSLKAVIACLYYQQFPTEKKSEGLLPIIQHIKCAGRDLESLATVENLKEHLRNNMVEALIDGWIQKRLIKTYVDCCKELSEVPKIKVLKKLYNLEVSDDEIIASDCDLQDLSITPLIDALHSQMAFSMLDISHNCLGNGTMEKLRKVFTASGQSYGCLTLDLHCNRFGPTTLFQICECSVLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNVENCCITTRTIQKIADALDSSSVLSHLCIGHNSPVSGNALVNLLSKLSTLKRFSELNMSGLKLGKPVVDSLCQLAGTLALSGLILGGTGIGNEGAIKVTEALLKGTEELVKLDLSYCGLTCDYILSINVNSFCSITELSLEGNPILLEGSNTLFPLLINPQCCLKVLILRKCQLGRAGVLHIIEALADNSSLEELNLADNSVPTEFSALQCELPSKSCSQNQEDKLDTMKVDDNQEAFGSLNTLDEQLEVADSEDIPGGAEAAASGIDDSASSCQRNSTPECNLTQQFSSAIAKAKNLQLLDLSDNSFSAQAAETFYGSWTTLRPLSSHRHITKNIIHFSTKEKKCCSVKLCCKKV 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05166 1317 PANTHER PROTEIN TONSOKU 2 1316 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Trre7g05166 1317 MobiDBLite consensus disorder prediction 557 589 - -
Trre7g05166 1317 ProSiteProfiles TPR repeat region circular profile. 245 272 - -
Trre7g05166 1317 SMART tpr_5 65 98 IPR019734 GO:0005515
Trre7g05166 1317 SMART tpr_5 376 409 IPR019734 GO:0005515
Trre7g05166 1317 SMART tpr_5 205 238 IPR019734 GO:0005515
Trre7g05166 1317 SMART tpr_5 416 449 IPR019734 GO:0005515
Trre7g05166 1317 SMART tpr_5 162 195 IPR019734 GO:0005515
Trre7g05166 1317 SMART tpr_5 245 278 IPR019734 GO:0005515
Trre7g05166 1317 FunFam Protein TONSOKU 819 1191 - -
Trre7g05166 1317 Coils Coil 298 325 - -
Trre7g05166 1317 Gene3D Tetratricopeptide repeat domain 2 319 IPR011990 GO:0005515
Trre7g05166 1317 Gene3D Ribonuclease Inhibitor 820 1303 IPR032675 -
Trre7g05166 1317 Gene3D Tetratricopeptide repeat domain 320 489 IPR011990 GO:0005515
Trre7g05166 1317 SUPERFAMILY TPR-like 156 491 IPR011990 GO:0005515
Trre7g05166 1317 Pfam Tetratricopeptide repeat 205 276 - -
Trre7g05166 1317 FunFam Protein TONSOKU 1 154 - -
Trre7g05166 1317 SUPERFAMILY RNI-like 836 1285 - -
Trre7g05166 1317 Pfam Tetratricopeptide repeat 377 402 IPR019734 GO:0005515
Trre7g05166 1317 Pfam Tetratricopeptide repeat 163 191 IPR019734 GO:0005515
Trre7g05166 1317 SUPERFAMILY TPR-like 16 146 IPR011990 GO:0005515
Trre7g05166 1317 Pfam Tetratricopeptide repeat 67 99 IPR019734 GO:0005515
Trre7g05166 1317 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Trre7g05166 1317 SMART LRR_RI_2 1122 1149 - -
Trre7g05166 1317 SMART LRR_RI_2 954 981 - -
Trre7g05166 1317 SMART LRR_RI_2 867 894 - -
Trre7g05166 1317 SMART LRR_RI_2 1038 1065 - -
Trre7g05166 1317 SMART LRR_RI_2 926 953 - -
Trre7g05166 1317 SMART LRR_RI_2 1093 1120 - -
Trre7g05166 1317 SMART LRR_RI_2 1150 1176 - -
Trre7g05166 1317 MobiDBLite consensus disorder prediction 557 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05166 Trre-Chr7 58246337 58255591 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05166 - - gmx:100805682 2013.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05166 7 58246337 58255591 Trre7g05166 7 58246337 58255591 ECH