Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05154 ATGGTTTGGAAATTCGCACGCACCCGTGTAAAATCAATCTTCCAGAACCTTCACTCACTCTCTCTCTCAATGGCACGTACCAAGCAAACTGCTCGCAAATCCACCGGCGGCAAGGCTCCAAGGAAGCAGCTAGCGACAAAGGCTGCTCGGAAATCAGCTCCGGCAACCGGCGGAGTGAAGAAGCCACACAGATTCAGACCAGGAACCGTTGCTTTAAGAGAGATCCGAAAGTACCAAAAGAGCACAGAGCTTCTTATCCGGAAACTTCCATTCCAACGCCTTGTTCGTGAAATCGCTCAAGATTTCAAAACAGATCTCAGATTCCAGAGCAGTGCCGTTTCGGCTCTTCAAGAAGCTGCAGAAGCTTACTTGGTTGGACTCTTTGAAGACACTAATCTTTGCGCTATTCATGCTAAGAGAGTCACCATCATGCCTAAGGACATTCAGCTTGCAAGAAGAATCAGAGGCGAGAGGGCTTAG 480 0.4875 MVWKFARTRVKSIFQNLHSLSLSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05154 159 SUPERFAMILY Histone-fold 25 156 IPR009072 GO:0046982
Trre7g05154 159 FunFam Histone H3.3 76 159 - -
Trre7g05154 159 Pfam Core histone H2A/H2B/H3/H4 24 155 IPR007125 GO:0003677
Trre7g05154 159 FunFam Histone H3 25 73 - -
Trre7g05154 159 MobiDBLite consensus disorder prediction 25 64 - -
Trre7g05154 159 Gene3D Histone, subunit A 25 159 IPR009072 GO:0046982
Trre7g05154 159 PRINTS Histone H3 signature 81 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 PRINTS Histone H3 signature 121 137 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 PRINTS Histone H3 signature 137 158 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 PRINTS Histone H3 signature 103 121 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 PRINTS Histone H3 signature 40 54 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 PRINTS Histone H3 signature 26 40 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 PRINTS Histone H3 signature 57 78 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 PANTHER HISTONE H3 24 157 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 SMART h35 57 159 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 ProSitePatterns Histone H3 signature 1. 38 44 IPR000164 GO:0000786|GO:0003677|GO:0030527
Trre7g05154 159 ProSitePatterns Histone H3 signature 2. 90 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05154 Trre-Chr7 58161172 58164247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05154 K11253 - lper:127338098 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05154 7 58161172 58164247 Trre7g05154 7 58161172 58164247 ECH