Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04896 ATGTGGCGGTGCATGTTGATTTTCATCAATATTATATTGATCGGAGCAACCATATTGGAGCTAAATCCAGTGGCTGCGGTGGTGAACGGTGTTCCACTTAAAACAAGTTCAAGATGGATTGTGAATCAAAATGGACAAAGGGTAAAATTGGCATGTTTAAATTGGGTGTCACATTTAGATGCTGTTGTAGCTGAAGGGCTTAGTAAAAAGCCCGTGGGTGTTATATCTTATGGAATAAAGTCCATGGGCTTTAACTGTGTTAGGCTTACTTGGCCTATTCTTCTTCTAACTAATGATACTCTTTCTTCTCTTTCGGTTAGACAATCATTTCAGAATCTTGGTTTACTTGAATCTATAGCTGGTTTTCAATCCAATAATCCTTCCATTATTGATCTTTCCCTCATTCAAGCTTTTCAGGCAGTTGTGAAAAGTCTTGGGGACAACAATGTGATGGTGATTTTGGACAACCATATAACCCAACCCGGGTGGTGTTGTAGTGGCTCTGACGGTAATGGATTCTTTGGCGACCAATATTTCGACCCAAATTTATGGATCACGGGGCTCACCAAAATGGCCACTCTTTTCAGAGGAGTGACCAATGTGGTGGGTATGAGCTTGAGAAATGAACTCCGAGGTCCAAAACAGAATGTCGACGATTGGTACAGGTATATGGTGCAAGGAGCAGAAGCAGTTCATGCGGCAAATCCAGATGTTCTTGTAATTTTATCTGGATTAAATTTTGATAAGGACTTATCTTTTATTGCGAAAAGACCAGTGAGCCTAACATTCACAGAAAAACTAGTGTTTGAGGCACATTGGTATGGGTTCACTGATGGTCAAGCTTGGGTGTCGGGTAACCCGAATCAAGTATGTGGACAAGTAGCTGGAAATATGAAGAGAATGTCTGGCTATTTGGTTGATCAAGGATGGCCATTGTTTGTGAGTGAGTTTGGGGTGGATTTGAGGGGTACTAATGTCAATGATAACCGTTATCTTAACTGTTTTATAGCATATGCAGCTGAGCTTGATTTGGATTGGGCATTGTGGACATTGGTTGGTAGTTACTATTTTAGACAAGGGGTTATGGGAATGGAAGAGTTTTATGGGATTATCAATTGGGATTGGTCACAAGTTAGAAATGCTAGTTTCTTGCATAGGATTGCTTCCCTTCAACTTCCATTTCAAGGTCCAGGCATAACAATAGGCAATCCACACAAACTGATTTTCCATCCTTTAACCGGTCTTTGCGTGATACGAAAGTCACTACTAGAGCCACTAGAATTAGGTCCATGCTCTCTTTCTGATGGTTGGGACTACACACCACAGAAGGTACTATCAATTAAGGGTACATACTATTGCATACAAGCACAGAAAGAAGGGATGCCTGCAACACTTAGCATACAATGTTCAAATCCTAACTCTCAATGGGACATCATCTCAGACTCCAAATTGCACCTTTCATCAAAAACTAGCACTGGATCAACAGATGTTTGTCTAGATGTGAACGAAAAGAACGTCATTGTGACCAATGCGTGTAAATGCTTGAGCAACGATCAATCATGCGACCCTGCAAGCCAGTGGTTTAAACTTGTTGATAGTGGTAGGAGATCAACTTCGTCAACCTCGACATTGTCCGAGCTAAATTTATTGGAGCTTTTCATGACACCATTGAACTCAAAATAA 1683 0.4088 MWRCMLIFINIILIGATILELNPVAAVVNGVPLKTSSRWIVNQNGQRVKLACLNWVSHLDAVVAEGLSKKPVGVISYGIKSMGFNCVRLTWPILLLTNDTLSSLSVRQSFQNLGLLESIAGFQSNNPSIIDLSLIQAFQAVVKSLGDNNVMVILDNHITQPGWCCSGSDGNGFFGDQYFDPNLWITGLTKMATLFRGVTNVVGMSLRNELRGPKQNVDDWYRYMVQGAEAVHAANPDVLVILSGLNFDKDLSFIAKRPVSLTFTEKLVFEAHWYGFTDGQAWVSGNPNQVCGQVAGNMKRMSGYLVDQGWPLFVSEFGVDLRGTNVNDNRYLNCFIAYAAELDLDWALWTLVGSYYFRQGVMGMEEFYGIINWDWSQVRNASFLHRIASLQLPFQGPGITIGNPHKLIFHPLTGLCVIRKSLLEPLELGPCSLSDGWDYTPQKVLSIKGTYYCIQAQKEGMPATLSIQCSNPNSQWDIISDSKLHLSSKTSTGSTDVCLDVNEKNVIVTNACKCLSNDQSCDPASQWFKLVDSGRRSTSSTSTLSELNLLELFMTPLNSK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04896 560 SUPERFAMILY (Trans)glycosidases 32 380 IPR017853 -
Trre7g04896 560 SUPERFAMILY Ricin B-like lectins 403 529 IPR035992 -
Trre7g04896 560 Gene3D Glycosidases 31 390 - -
Trre7g04896 560 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 19 534 - -
Trre7g04896 560 Pfam Cellulase (glycosyl hydrolase family 5) 79 351 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04896 Trre-Chr7 56172076 56175478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04896 32 540 Glycoside Hydrolase AT1G13130 59.844 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04896 - - gmx:100790415 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04896 7 56172076 56175478 Trre7g04896 7 56172076 56175478 ECH