Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03866 ATGGCTTCATCAGAGATCGAAGTTGTATCATCGGACTCCAAACCCCAACAACAACAACAACAACAGCAGCAGCAGCAGCAACAACCACCTCCCATACTCGACGTTTTCGCTGCCTCTATCCATGGTGACTTTCAAAAATTGAGAACCTTCGTTGAACAAGACGGTGCCTCCGTTTCTCTTCCTGATGTTAATGGCTATTATGCTCTTCAATGGGCTTCTCTTAACAACTTTCATGACATTGTTCACTATCTCATTCAGCATGGTAGTAATGTCAATGCTAAAGACAACATGCAACAAACGGCTTTACATTGGGCGGCAGTTCGTGGGTCAATTGCAGCAGCTGATGTGCTCTTGGAGAATGGTGCTAGGGTTGAAGCTTCTGATATAAATGGATACCGGGCAGTTCACGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACCTTATTGTAAAATACCATGCTGATTTTGATGTGCCTGATAATGACGGAAGGAGTCCTCTACATTGGGCTGCGTATAAGGGATATGCTGATACAATAAGATTACTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACCCCGTTGCATTGGGCAGCATTAAGAGGACATTCAGAGGCGTGTGCTGTGCTTGTACATGCTGGGACAAAGGAAGAATTGACGGTGAAGGACAATGCAGGATTCACTCCTGTACAGCTTGCATATGATAAAGGTCATCGACATGTCGCCCCTTTCCTTTCTAATCAACAACGGGCTCATAGCAACCCCTGGAGACGCAAACTTTATTGTGGGATGGTAACAGATATTGGTTATGCTCCCATTTTATTGTGTGTTATAGTCTCTCTCTCGATCCTGTTTGTCCATTCAGTTGTTGCAGCTCCTAACCTTAAAAAGATAACCGCCGCTGTTGGATTTTGGTCATGGATAGCTATTTCTTCATCTGCTGCTTCCTTGGTTATGTTTTATAGGTGTAGTAGTAAAGATCCAGGTTATATAAAACGGCCAGGAGAGATGGGTACTCTAAACGATACAGAGGATCCTTTGTTGAATATTGAGCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCAACCTGCAAGATAATAAGACCTGTCCGGTCTAAGCATTGCCCTACTTGTAAGCGTTGTGTAGAGCAGTTCGACCACCATTGTCCATGGATATCTAATTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCTTGGGAACTATAACTGCTTCCTCCAGTGCCATCGTTGCAATTCATAGAATTTGGACATCAATACCAGCATTACCGGCAGGAGAAACATGGATCCATCACGTATTAGTAAGACATCCAGGTCTTGTTGCATTTTTGGTGATGGATGCTGTTGTTGTCGTTGCAACTACAACTTTGACAGTAACACAGGCTTCCATGATAGCACGAAATGTGACCACAAACGAATTAGCAAACTCCTCACGGTATGAGTATCTTCGCGGTCCTGATGGGCGTTTCAGAAACCCATATAATCATGGTTGGTGGAAAAACTGTGCTGATTTCCTTTTTCTAGGCCACACAGACGATGATGATATTGCTTGGCCTCCATTACAGCAGGTGGCTACTTAG 1647 0.4329 MASSEIEVVSSDSKPQQQQQQQQQQQQQPPPILDVFAASIHGDFQKLRTFVEQDGASVSLPDVNGYYALQWASLNNFHDIVHYLIQHGSNVNAKDNMQQTALHWAAVRGSIAAADVLLENGARVEASDINGYRAVHVAAQYGQTAFLNHLIVKYHADFDVPDNDGRSPLHWAAYKGYADTIRLLLFRDASQGRQDKDGCTPLHWAALRGHSEACAVLVHAGTKEELTVKDNAGFTPVQLAYDKGHRHVAPFLSNQQRAHSNPWRRKLYCGMVTDIGYAPILLCVIVSLSILFVHSVVAAPNLKKITAAVGFWSWIAISSSAASLVMFYRCSSKDPGYIKRPGEMGTLNDTEDPLLNIELNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTITASSSAIVAIHRIWTSIPALPAGETWIHHVLVRHPGLVAFLVMDAVVVVATTTLTVTQASMIARNVTTNELANSSRYEYLRGPDGRFRNPYNHGWWKNCADFLFLGHTDDDDIAWPPLQQVAT 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03866 548 ProSiteProfiles Ankyrin repeat profile. 197 229 IPR002110 GO:0005515
Trre7g03866 548 ProSiteProfiles Ankyrin repeat profile. 164 196 IPR002110 GO:0005515
Trre7g03866 548 ProSiteProfiles Ankyrin repeat region circular profile. 164 190 - -
Trre7g03866 548 Pfam Ankyrin repeats (many copies) 166 217 IPR002110 GO:0005515
Trre7g03866 548 MobiDBLite consensus disorder prediction 1 29 - -
Trre7g03866 548 SMART ANK_2a 64 93 IPR002110 GO:0005515
Trre7g03866 548 SMART ANK_2a 164 193 IPR002110 GO:0005515
Trre7g03866 548 SMART ANK_2a 232 261 IPR002110 GO:0005515
Trre7g03866 548 SMART ANK_2a 97 126 IPR002110 GO:0005515
Trre7g03866 548 SMART ANK_2a 130 160 IPR002110 GO:0005515
Trre7g03866 548 SMART ANK_2a 197 228 IPR002110 GO:0005515
Trre7g03866 548 Pfam Ankyrin repeats (3 copies) 37 128 IPR002110 GO:0005515
Trre7g03866 548 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
Trre7g03866 548 ProSiteProfiles Ankyrin repeat profile. 97 129 IPR002110 GO:0005515
Trre7g03866 548 FunFam S-acyltransferase 19 150 - -
Trre7g03866 548 ProSiteProfiles Ankyrin repeat region circular profile. 64 96 - -
Trre7g03866 548 FunFam S-acyltransferase 151 259 - -
Trre7g03866 548 ProSiteProfiles Ankyrin repeat profile. 130 163 IPR002110 GO:0005515
Trre7g03866 548 ProSiteProfiles Ankyrin repeat region circular profile. 197 221 - -
Trre7g03866 548 Pfam DHHC palmitoyltransferase 371 498 IPR001594 GO:0016409
Trre7g03866 548 Gene3D - 2 150 IPR036770 -
Trre7g03866 548 Gene3D - 151 258 IPR036770 -
Trre7g03866 548 SUPERFAMILY Ankyrin repeat 36 254 IPR036770 -
Trre7g03866 548 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 6 529 - -
Trre7g03866 548 ProSiteProfiles Ankyrin repeat region circular profile. 97 128 - -
Trre7g03866 548 ProSiteProfiles DHHC domain profile. 371 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03866 Trre-Chr7 46942262 46949449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03866 42 265 Miscellaneous Gene Families AT2G31820 25.641 2.53e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03866 K20032 - gmx:100807263 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03866 7 46942262 46949449 Trre7g03866 7 46942262 46949449 ECH