LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g03863	ATGGAAGCACATGCAGCTGGAGCCAATCAGAGGATTGCAAGAATCTCTGCTCATCTTCAACCTCCAAATTTCCAGGAAGGAGGTGATGTTGCAATTAGCAAAGCTAACTGCAGAGCAAAAGGTGGGGCGCCGGGATTCAAAGTAGCAATCTTGGGGGCTGCTGGTGGAATTGGTCAATCCCTTTCTTTGCTGTTGAAGATCAATCCATTGGTTTCGGTTCTTCATCTTTATGATGTTGTCAACACTCCTGGTGTCACTGCTGATGTTAGTCACATTGACACCGGTGCTGTGGTTCGTGGCTTTCTAGGGCAGGCACAACTTGAGAATGCACTTACAGGCATGGACTTGGTCGTTATACCTGCTGGTGTGCCGAGGAAACCTGGAATGACAAGGGATGACTTATTTAAGATAAATGCTGGAATTGTGAGGACTCTTTCTGAAGGAATTGTCAAGAGCTGTCCTAATGCAATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGCCAATTGCTGCTGAGGTCTTCAAGAAAGCCGGTACATATGATCCAAAACGACTTTTAGGGGTTACAACCCTCGATGTTGTGAGGGCAAATACTTTTGTGGCAGAAGTACTTGGTGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTAGGAGGGCACGCAGGAGTAACAATATTACCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCGGCAACACTATCAATGGCCTATGCAGCTGCCAAGTTTGCTAACGCATGCCTCCGTGGCTTGAAAGGAGAAGCCGGGATAGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACGGAACTTCCTTTCTTTGCAGCCAAGGTTCGTCTTGGTCGCGGTGGAGCAGAAGAGATATATCAACTTGGTCCCCTTAATGAGTATGAGAGGATTGGATTAGAAAAAGCGAAGAAAGAGTTAGCAGGAAGCATCCAGAAGGGAGTAGAATTCATCAAAAAATAA	1074	0.459	MEAHAAGANQRIARISAHLQPPNFQEGGDVAISKANCRAKGGAPGFKVAILGAAGGIGQSLSLLLKINPLVSVLHLYDVVNTPGVTADVSHIDTGAVVRGFLGQAQLENALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVRTLSEGIVKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANACLRGLKGEAGIVECAFVDSQVTELPFFAAKVRLGRGGAEEIYQLGPLNEYERIGLEKAKKELAGSIQKGVEFIKK	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g03863	357	PANTHER	MALATE AND LACTATE DEHYDROGENASE	31	357	-	-
	Trre7g03863	357	NCBIfam	malate dehydrogenase	47	356	IPR010097	GO:0006099\|GO:0030060
	Trre7g03863	357	CDD	MDH_glyoxysomal_mitochondrial	46	355	IPR010097	GO:0006099\|GO:0030060
	Trre7g03863	357	PIRSF	Lac_mal_DH	45	355	IPR001557	GO:0016616\|GO:0019752
	Trre7g03863	357	ProSitePatterns	Malate dehydrogenase active site signature.	190	202	IPR001252	GO:0006108\|GO:0016615
	Trre7g03863	357	SUPERFAMILY	LDH C-terminal domain-like	190	356	IPR015955	GO:0003824\|GO:0016616
	Trre7g03863	357	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	45	189	IPR036291	-
	Trre7g03863	357	FunFam	Malate dehydrogenase	191	357	-	-
	Trre7g03863	357	FunFam	Malate dehydrogenase	44	190	-	-
	Trre7g03863	357	Gene3D	-	38	190	-	-
	Trre7g03863	357	Gene3D	-	191	357	IPR015955	GO:0003824\|GO:0016616
	Trre7g03863	357	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	191	355	IPR022383	GO:0016616
	Trre7g03863	357	Pfam	lactate/malate dehydrogenase, NAD binding domain	47	189	IPR001236	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g03863	Trre-Chr7	46928059	46930499	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g03863	K00026		-	gmx:100170735	647.506

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g03863	7	46928059	46930499	Trre7g03863	7	46928059	46930499	ECH