Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03323 ATGGCACCAAAAGGAGAGAAGAAGCCAGCGGAGAAGAAACCCGCAGAAGAGAAGAAGTCGACCGTAGCAGAGAAAGCTCCCGCTGAGAAGAAGCCAAAGGCCGGAAAGAAGCTACCAAAGGAAGGTGGTTCAGCCGCCGGAGACAAGAAGAAGAAGAGAAACAAGAAGAGCGTTGAGACTTACAAGATCTACATCTTCAAAGTTCTGAAGCAAGTTCACCCTGACATTGGTATCTCAAGCAAAGCCATGGGAATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTCGCTCAAGAATCATCAAGACTTGCAAGGTACAACAAAAAGCCAACAATCACTTCTAGGGAAATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAATTGGCTAAGCATGCTGTTTCCGAGGGTGCACACAAAATGTTCGGACAATTGCTAGCAAGGACTAAACACATTTCTGAATAA 468 0.4466 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGAHKMFGQLLARTKHISE 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03323 155 SMART h2b3 51 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 SUPERFAMILY Histone-fold 32 140 IPR009072 GO:0046982
Trre7g03323 155 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 PANTHER HISTONE H2B 12 142 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 FunFam Histone H2B 1 145 - -
Trre7g03323 155 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Trre7g03323 155 Pfam Core histone H2A/H2B/H3/H4 1 124 IPR007125 GO:0003677
Trre7g03323 155 Gene3D Histone, subunit A 22 143 IPR009072 GO:0046982
Trre7g03323 155 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03323 Trre-Chr7 32716520 32717236 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03323 K11252 - csin:114281315 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03323 7 32716520 32717236 Trre7g03323 7 32716520 32717236 ECH