Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03233 ATGTTGCTTCGCGAGCAACGGAGACAAGAAGGCGGCGATGATCGCGAACGAGAGCTTAATATATTTAGGAGTGGATCAGCTCCTCCAACTGTGGAGGGTTCTTTGAATGCTGTTGGAGGGTTGTTTGGTGGTAGTGGTGGTGTTGGTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGTTACTGCTGGTTTTTCTGATTTTCATGGGAATCAAGATGTGAATGGGATTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTCAATACTATTATTCCAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTGTCAAAAGAAGATTGGAGGTTTCAACAGAGGCTTAAAGGTGGAACATCAGTTGTAGGTGGAATTGGAGATAGGAGGAAGGCTAATACAACTGATGATAATGGTGGTAGGTCAATGTTTGTGACGCCGCCCGGTTTTAACTTTAGGAAGCAAGAAAGGAGCGAGGTGGAAAATGAAAAAATGAGAGGTTCTGCTGAATGGGGTGGCGATGGTTTAATTGGTTTGCCTGGCTTGGGACTTAGGACCAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGATATGGAGCGTAACACACCTGTCACAGGCCTTCCTTCTCGTCCAGCAAGTCGTAATGCATTTGATGAAAATGTTGATATCATAAGTACTTCTGAAGCTGAGTTGTCTCATGGATCATCTGCAACACAAAATATTGGTCTGCCAACTTCATATTCTTATGCTGCTGCACTTGGAGGATCTTCATTATCTAGAAGCACTACTCCCGATCCACAACATATTGCTAGGGCTCCTAGTCCATGCCTCACACCTATTGGTGGAGGAAGAAGTGCTGCTTCTGACAAGAGAGGCATTGTCAGTCCGGATGCATTTAACGGCGTTTCATCTGGCAAGAATGAGTCGACAGATCTTGTGAATGCGTTATCAGGGATGAACTTGTCAGCAGATAATGAAAACCATTTGCCATCACAGGTCGAATCAGATGTTGATAATCACCAGAGGTACCTTTTTGGTATGCAGGGTGGTCAAGATCACGGCAAGCAACATCCATATCTAAATCGATCTGAATCAGGACATTTGCAGAGTTCGGTTAAGAACAGTAGGAGTGGGTCGGACCTCAATAATCTATCCCTGCGTAGGCAGGTTGAGCTACAAAACTCTACTGCTCCTAATAACTCGTATTTCAAAGGATCACCTACCTCCCAATTTAGTGGAGGTAATTTGCCAGCTCAACAGTACCAGTCTGTAGATGGTATGAATTCGTCATTTAATAACTATGGACTAGGTGGTTATGCCGGAAATCCAGCACTGACATCCTTGATGACTAACCAATATGGCACCAGTAATCTGCCACCCCTGTTTGAAAACGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGATTCGAGAATTCTTGGAGCTGGTTTGGCTTCTGGAGGTAGTTCTCCTGATGTGCATAGTCTTGGTCGGATGGGAAATCAAATTGCAGGTGGTGCTCTTCAGGCTCCGTTTGTTGATCCGATGTATCTTCAATACATGAGGACATCAGAGTATGCTGCAGCACAACTTGCTGCTCTTAACGACCCTTCTGTAGTGGACAGGAACTACCTAGGTAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGATCTGTCCTCTCGCCTCAAAAGTCGCAATACAACGTACCATTGGGTGGTAAATCAGGCAACTCCAATCACCATGGTTATTATGGAAATCAGGCATACGGTGTTGGGTTGTCCTATCCAGGAAGTCCAATGGCAAACTCTGGTTCTCCAGTTGGATCTGGAAGTCCTATTAGGCACAATGATCTGAACAACATGCGGTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATCTAGATGCTGGGAACATGGATGAAAGCTTCGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAACAAAGCCAAATGTTTTGAGCTTGCTGAAATTTCCGGCCATGTCGTTGAATTCAGTGCGGATCAATATGGAAGCCGATTTATTCAGCAGAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCACGGGCTTGCACCCCAGCGAAGAGAATTAGCCAACAAGCTTCTTGGCCATGTTTTGACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGATGCAATCGACTTTATCATTTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGCGAAAACCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGCAGCTGTTAGCATGTTAGCACAGGATCAGTATGGCAACTACGTTGTTCAGCATGTACTGGAACATGGAAAGCCTCACGAGCGTTCTACTATAATAAAGGAATTAGCAGGGAGGATCGTTCAAATGAGTCAACAAAAGTTTGCCTCCAATGTTGTGGAGAAATGCTTGACCTTCAGTGGTCCTTCAGAACGCCAAATACTAGTCAGTGAGATGCTTGGAACCACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAACTATGTTGTCCAAAAGGTGCTGGAAACATGTGACGACCATCAACGTGAGCTGATTCTTTCACGAATCAAGGTTCATTTGAATGCATTAAAAAAGTACACCTATGGAAAGCATATCGTCGCGCGTGTAGAGAAACTTGTTGCTGCTGGAGAGAGAAGAGTTGCTGCACAGACGACGACTCCTCAACCTGCTTAG 3042 0.4392 MLLREQRRQEGGDDRERELNIFRSGSAPPTVEGSLNAVGGLFGGSGGVGVVGGGGGGGGVTAGFSDFHGNQDVNGIVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGTSVVGGIGDRRKANTTDDNGGRSMFVTPPGFNFRKQERSEVENEKMRGSAEWGGDGLIGLPGLGLRTKQKSLAEIFQDDMERNTPVTGLPSRPASRNAFDENVDIISTSEAELSHGSSATQNIGLPTSYSYAAALGGSSLSRSTTPDPQHIARAPSPCLTPIGGGRSAASDKRGIVSPDAFNGVSSGKNESTDLVNALSGMNLSADNENHLPSQVESDVDNHQRYLFGMQGGQDHGKQHPYLNRSESGHLQSSVKNSRSGSDLNNLSLRRQVELQNSTAPNNSYFKGSPTSQFSGGNLPAQQYQSVDGMNSSFNNYGLGGYAGNPALTSLMTNQYGTSNLPPLFENVAAASAMASPGMDSRILGAGLASGGSSPDVHSLGRMGNQIAGGALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNVPLGGKSGNSNHHGYYGNQAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWHLDAGNMDESFASSLLEEFKSNKAKCFELAEISGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAPQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCENPTTQQKVMDEILAAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGRIVQMSQQKFASNVVEKCLTFSGPSERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRVAAQTTTPQPA 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03233 1013 MobiDBLite consensus disorder prediction 365 385 - -
Trre7g03233 1013 MobiDBLite consensus disorder prediction 261 294 - -
Trre7g03233 1013 SUPERFAMILY ARM repeat 659 993 IPR016024 -
Trre7g03233 1013 Gene3D - 656 1002 IPR011989 -
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 929 970 IPR001313 GO:0003723
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 784 819 IPR001313 GO:0003723
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 712 747 IPR001313 GO:0003723
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 748 783 IPR001313 GO:0003723
Trre7g03233 1013 CDD Pumilio 679 992 IPR033712 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 680 714 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 863 894 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 824 859 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 795 818 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 752 785 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 943 972 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 897 931 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Pumilio-family RNA binding repeat 716 749 IPR001313 GO:0003723
Trre7g03233 1013 MobiDBLite consensus disorder prediction 123 151 - -
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 893 928 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 712 747 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 935 970 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 748 783 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 820 856 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 893 928 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 784 819 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 857 892 IPR001313 GO:0003723
Trre7g03233 1013 SMART pum_5 676 711 IPR001313 GO:0003723
Trre7g03233 1013 FunFam Pumilio homolog 1 isoform 2 655 1002 - -
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 820 856 IPR001313 GO:0003723
Trre7g03233 1013 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 656 996 IPR033133 GO:0003723
Trre7g03233 1013 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 88 995 - -
Trre7g03233 1013 MobiDBLite consensus disorder prediction 348 385 - -
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 676 711 IPR001313 GO:0003723
Trre7g03233 1013 Pfam Nucleic acid binding protein NABP 274 675 IPR012940 -
Trre7g03233 1013 ProSiteProfiles Pumilio RNA-binding repeat profile. 857 892 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03233 Trre-Chr7 30502137 30507255 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03233 K17943 - gmx:100803806 1594.33