Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03154 ATGTTGAAGGTGGCAGTGCGGTGGAATTGGAGGCAACTCTATCCTCACCCTCTAACTTGCATTACACACCTAAAAATACGCTCACGAAACCCTTATCTTCGTATTCCCAACTCGAAGCTCTTTTGTTCCGCTGCTCTTCAAACATCACCTTCTCTCAATGCCGAACTGGAACCATACATCCACTGTTCCATGCCGCAAAAGCCACTCCGAGTTGCTGTTCTTATTAGCGGAGGCGTTGACAGCAGTGTTGCTCTCCGGCTACTCCATGCCGCTGGCCATTCTTGTACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTTGAGAACTTCTGGTCGGAGTGCCCTTGGGAAGATGATTTAAAGTATGCTAAAGATGTTTGCAATCAGGTCGAAGTACCATTAGAAGTTGTTCATTTGACAAATGAATACTGGAAAAATGTGGTTTCTTACATTATTGAAGAGTATCGGTGTGGTCGAACTCCGAATCCGGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTTTTGGATGCAATTGGCGGTATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAAGGTTATCCACCCATATGCAGATAAGATGGATGGCCCTTCTATTCTAGAACTATCACAAGACACGGTAAAGGACCAAACTTACTTCTTATCACACCTATCTCAGTCCCAGCTGAAGCGACTTCTTTTTCCACTTGGTTCTATTCCCAAGGATGAAGTCCGCAGGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAGGGAATATGTTTTTTGGGCAAGATAAAATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAAAGAAGGTGTCATACTGGAAGCCGAGACAGGAGATTACCTGGGCAATCATCGGGGCTTCTGGTTTTATACTATTGGTCAACGCCAAGGTCTACGGCTACCCGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCCAGAAACTACTTTTCCTTTGACAAAAGAAGGCGCATATTCCGTGTTGGCTCTTTAAAATGGCTTAGTGGGTTTTCCCCTAGCCAAACAAGTCAGCTTCGATGCAAGGTGAGACATGGCCCTGGGTTCTATGATTGTAGCTTACAAATGGAACTTGAAGGAGATAATGGAATTGACTCTGCTGTTGTCTGCATATCTGAAGATGATCAAGGCTTAGCAGCTGGGCAGTTCACAGCCTTCTATGAGGGAAGAATGTGCATTGGCTCTGGTGTGATTTTGGAGTCCGGGGATGATCAAAGTTATCCTGTATGCGCAAAAGCTTTAGAAATTGCAAGAATGGAAGATAAATCGAAGATTGGGAATCCAGTTAAGATAAAAGTTAAACCAGATAACCCACAAGAAGTTTGTTGTTCCACAGAATTGGCAAGTAAAGCATCAAAGGGGATTAAGAAATTCTAG 1473 0.4304 MLKVAVRWNWRQLYPHPLTCITHLKIRSRNPYLRIPNSKLFCSAALQTSPSLNAELEPYIHCSMPQKPLRVAVLISGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKDVCNQVEVPLEVVHLTNEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYAKVIHPYADKMDGPSILELSQDTVKDQTYFLSHLSQSQLKRLLFPLGSIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEKEGVILEAETGDYLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRIFRVGSLKWLSGFSPSQTSQLRCKVRHGPGFYDCSLQMELEGDNGIDSAVVCISEDDQGLAAGQFTAFYEGRMCIGSGVILESGDDQSYPVCAKALEIARMEDKSKIGNPVKIKVKPDNPQEVCCSTELASKASKGIKKF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03154 490 Pfam tRNA methyl transferase HUP domain 70 273 - -
Trre7g03154 490 CDD tRNA_Me_trans 70 430 IPR004506 GO:0008033|GO:0016740
Trre7g03154 490 FunFam tRNA-specific 2-thiouridylase MnmA 283 342 - -
Trre7g03154 490 Pfam tRNA methyl transferase PRC-barrel domain 278 340 IPR046884 -
Trre7g03154 490 PANTHER - 53 473 - -
Trre7g03154 490 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 69 431 IPR004506 GO:0008033|GO:0016740
Trre7g03154 490 Gene3D Translation factors 349 439 - -
Trre7g03154 490 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 70 315 - -
Trre7g03154 490 Gene3D - 283 342 IPR023382 GO:0016783
Trre7g03154 490 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 70 430 IPR004506 GO:0008033|GO:0016740
Trre7g03154 490 Gene3D HUPs 58 282 IPR014729 -
Trre7g03154 490 Pfam Aminomethyltransferase beta-barrel domain 350 430 IPR046885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03154 Trre-Chr7 29531883 29535296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03154 K21027 - gmx:100785275 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03154 7 29531883 29535296 Trre7g03154 7 29531883 29535296 ECH