Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03113 ATGAAGGCTTTTGTGTGTTTGTTTATGGCCCTTATGGTGTATGGTTGTGCTGCTGTTACCAAAGAATGCACAAACTCTCCGACTCTAACGCATACGCTTCGGTACGAGTTGTCGTCGTCAAAGAACGAGACATGGAAGAAAGAAGTGATGTCTCATTATCATTTGACACCAACTGATGAATCAGCTTGGGCAGATTTGCTTCCAAGGAAGTTCTTATCAGAAGAACAAAAAAATGATTGGGCTGTTATGTATAGAAAAATTAAGAATATGGGTGTTTTTAAGCCACCTGTTGGATTTCTCAAGGAAGTGCCTCTCGAGGACGTGAGGCTGCTGGAAGGTTCAATTCATGCTGTGGCACAGCAGACTAATTTGGAGTATCTGTTGATGTTAGATGTTGATAGGTTGCTTTGGAGCTTCAGGAATACAGCTGGTTTATCGACTCCCGGTACGCCTTATGGAGGATGGGAGGACCCTAAACAGGAACTCAGAGGACATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTAATGTGGGCCAGCACAAAGAATGATAGCCTGAAGCGGAAAATGACAGCTCTTGTTGCTGGTCTATCCGCTTGTCAGGAGAAAATTGGAACAGGATATCTATCAGCATTTCCACCCGAATTTTTCGATCGATTTGAAGATGTTAAACTTGTGTGGGCTCCCTATTACACCATTCACAAGATCTTGGCCGGCTTGTTGGATCAATATACTATAGGTGGAAACCCTCAAGCTCTAAAAATGGTGACATGGATGGTCGATTACTTTTACAACCGAGTGATGAATGTAATATCACAGTTCACTATAACTCGACACTATCAATCACTGAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATATATCTTAACGGGGGATTCAAAGCATCTATTGTTGGCACACCTTTTCGACAAGCCGTGCTTTTTAGGGTTGCTTGCAGTACAGGCTAATGACATAGCTGATTTTCATGCTAATACACATATTCCAATTGTTGTTGGAGCTCAAATGCGGTATGAAGTCACGGGTGATCCACTTTATAAGGAAATTGGGACATTCTTTATGGACGTTGTAAACTCTTCTCACAGTTATGCAACTGGAGGGACATCAGTTGGTGAATTCTGGAGTAATCCAAAGAGAATAGCAGACAACCTACACTCAGTAGAGACTGAAGAATCTTGCACAACATATAATATGTTGAAGGTTTCACGGCACCTATTCAGATGGACCAAAGAAGTCACATATGCAGATTATTATGAGCGTGCCTTAACGAATGGTGTACTCAGCATTCAAAGAGGAACAGATCCTGGGGTGATGATTTATATGCTTCCTCTAAGTATTGGGGTTTCCAAAGCTAAAACCTTCCATAAGTGGGGAACACCATTTGATTCTTTCTGGTGCTGCTACGGAACAGGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGGAAGGGAATAGTCCTAGTCTATACATCATTCAGTACATATCAAGTTCATTTAATTGGAAATCTGGGAAAGGTTTGCTCACTCAAACAGTTGTTCCAGCTTCTTCGTCGGACCCTTACCTACGAGTTACATTTACCTTCTCTCCTAATGAGAAAACTGGTACTTCGTCAACATTGAACTTCCGTCTACCATCTTGGACTCACGCTGACGGTGCAAAGGCGATATTGAATACTGAAACTTTATCTCTGCCAGCTCCAGGGAATTTTTTGTCAGTCACACGACAATGGAGTGCCGGTGACAAGCTGACTCTTCAGTTTCCTCTTACCATCAGAACAGAAGCCATAAAAGATGAAAGACCTCAATATGCATCTGTTCAAGCAATTCTTTATGGACCATATCTTCTTGCCGGTCATACCACAAGCAATTGGGACATTAAAGCCGGAACCGATTGGATTACTCCGATTCCTTCCAGTTACAATAGTCAACTATTTTCTTTTTCACAAGACTTTCAAAATTCAACTTTTGTTATAACAAACTCAAACCAATCACTCACAATGCAAAACTTACCTGAACCTGGAACCGATATCGCTCTTTATGCTACCTTTAGACTTATCCCAAAAGATGCTACCGGTAAATCAGTGATAATAGAACCGTTCCATCTTCCTGGAACGATTGTAAGTCACCAAGAACCAGACCAACCTCTTACTGTTATTGATTCATCGAAAGGCGGGCCTTCTTCTGTATTTCTCATAGTACCAGGATTAGACGGACGGAAGCAAACAATATCTTTACAATCACAAAGCAATAAAGATTGTTACGTGCATAGCGATATAAGCTCTGGTTCAGGAGTTAAGCTAAGATGCAAGTCTGATTCTGAAGCTGGTTTTAACCAAGCAACAAGCTTTGTTGCTGGGAAAGGATTAAGGCAATACCATCCTATCAGTTTTGTGGCTAAAGGTGGAAACCAGAATTTTCTTTTAGAGCCATTGTTCAACTTCAGGGATGAGCACTATACAGTTTATTTCAACATTCAAGATTGA 2526 0.4105 MKAFVCLFMALMVYGCAAVTKECTNSPTLTHTLRYELSSSKNETWKKEVMSHYHLTPTDESAWADLLPRKFLSEEQKNDWAVMYRKIKNMGVFKPPVGFLKEVPLEDVRLLEGSIHAVAQQTNLEYLLMLDVDRLLWSFRNTAGLSTPGTPYGGWEDPKQELRGHFVGHYLSASALMWASTKNDSLKRKMTALVAGLSACQEKIGTGYLSAFPPEFFDRFEDVKLVWAPYYTIHKILAGLLDQYTIGGNPQALKMVTWMVDYFYNRVMNVISQFTITRHYQSLNEETGGMNDVLYRLYILTGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHANTHIPIVVGAQMRYEVTGDPLYKEIGTFFMDVVNSSHSYATGGTSVGEFWSNPKRIADNLHSVETEESCTTYNMLKVSRHLFRWTKEVTYADYYERALTNGVLSIQRGTDPGVMIYMLPLSIGVSKAKTFHKWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGNSPSLYIIQYISSSFNWKSGKGLLTQTVVPASSSDPYLRVTFTFSPNEKTGTSSTLNFRLPSWTHADGAKAILNTETLSLPAPGNFLSVTRQWSAGDKLTLQFPLTIRTEAIKDERPQYASVQAILYGPYLLAGHTTSNWDIKAGTDWITPIPSSYNSQLFSFSQDFQNSTFVITNSNQSLTMQNLPEPGTDIALYATFRLIPKDATGKSVIIEPFHLPGTIVSHQEPDQPLTVIDSSKGGPSSVFLIVPGLDGRKQTISLQSQSNKDCYVHSDISSGSGVKLRCKSDSEAGFNQATSFVAGKGLRQYHPISFVAKGGNQNFLLEPLFNFRDEHYTVYFNIQD 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03113 841 Gene3D - 700 829 - -
Trre7g03113 841 SUPERFAMILY Six-hairpin glycosidases 162 450 IPR008928 GO:0005975
Trre7g03113 841 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Trre7g03113 841 PANTHER PROLINE-TRNA LIGASE (DUF1680) 18 839 - -
Trre7g03113 841 Pfam Beta-L-arabinofuranosidase, GH127 107 631 IPR012878 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03113 Trre-Chr7 28796764 28801540 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03113 K09955 - gmx:100781521 1366.29