Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g03090 | ATGCAGAAGGCACCAAATCCTCATGAGTTTGCTCTTAAGGAGACCTCACCGAACATTGGCGCAGGGGCAGTTACAAGGGACAAGCTATCCTGCACATATGATCTAGTTGAGCAGATGCAATACCTCTATGTTCGTGTCGTCAAAGCCAAGGATTTACCTACAAAAGATGTCACTGGTAGTCTTGATCCCTATGTTGAAGTTAAGCTTGGGAATTACAAGGGATTGACAAAGCATTTTGAGAAAAAGTCCAATCCTCAGTGGAATCAGATTTTTGCCTTCTCAAAAGATCGAATCCAAGCTTCAGTTTTGGAGGTGATTGTCAAAGATAAGGATGTTATAGCAGATGACTTTGTAGGGAGGGTATGGTTTGATCTGAATGATATACCTAAACGCGTACCTCCAGATAGCCCTTTGGCTCCACAATGGTATAGGCTCGAAGATCGCAAAGGAGAAAAAGCAAAGGGAGAGTTAATGCTTGCGGTTTGGATGGGAACTCAAGCAGATGAGGCATTTTCTGATTCTTGGCATTCGGATGCTGCACTGGTTGGATCTGAAGCAGTTGCAAACATAAGATCAAAAGTTTACTTGTCTCCTAAGCTTTGGTATGTTAGGGTCAATGTAATCGAAGCTCAGGATTTGGTTCCAACTGATAAAAGCCGGTATCCTGAAGTTTTTGTGAAGGTTGCTTTAGGGAATCAGTTTTCAAGAACTAGAATATCTCAAATTAAGACCATAAATCCTATATGGAATGAGGATTTGATGTTTGTCGCAGCCGAGCCATTCGAGGAGCCCTTAGTTTTAACTGTGGAAGACAGGGTTGCACCCAACAAAGATGAAACTCTAGGAAAATGTATGATTCCTTTGCATATGGTGCAAAGGAGGTTAGACCATAAGCCGGTTAACACTCGGTGGCATAATCTTGAGAAGCATTTGGTTGTTGAAGGCGAAAAGAAGGACACCAAATTCGCAAGCCGAATACATTTAAGGGTATGTTTGGATGGAGGATACCATGTGTTGGATGAATCAACTCATCACAGTAGTGATCTTAGGCCAACGGCGAAGCAGCTATGGAAGTCGGCTATCGGTATTCTAGAAGTTGGGATTATAAGTGCACAAGGGTTGATGCCGATGAAAACTAGAGATGGTAGAGGAACCACAGATGCTTATTGCGTAGCGAAATTCGGACAGAAGTGGATCCGTACTAGGACAATCGTCGATAGCTTTAGTCCAAAATGGAATGAGCAATACACTTGGGAAGTATTTGATCCATCTACTGTTATCACTATAGGTGTCTTTGATAACAATCATTTACAAGGTGGTGACAAATCAAAGGATTCTAGGATAGGGAAGGTAAGAATTAGGTTATCGACTCTTGAAACCGATAGAGTTTACACACATTCATATCCCCTATTAGTACTTAATCCATCAGGTGTGAAGAAAACAGGTGAAGTTCAATTGGCTGTTAGGTTCACAAACTCATCTTACATCAACATGTTGTATATATATTCCACGCCGTTGTTACCGAAAATGCACTACATCCATCCCTTATCGGTGATTCATCTCGACCATCTGAGGCATCAAGCGACACAAATTGTGTCAATGAGGATGAGCCGAGCTGAGCCACCGTTAAGGAAAGAGGTTGTAGAATACATGCTTGATGTGGATTCACATATGTGGAGTATGAGAAGAAGCAAAGCCAATTTCTTCAGAATAATGAAAGTTTTCGCGGGTTTGATAGCTTTTGGGAAGTGGTTTGATCAAATTTGCAACTGGAAAAACCCGATCACATCGATACTAATTCACATACTCTTCATAATATTGGTTCTTTACCCTGAACTAATACTTCCAACAATTTTCTTATACATGTTTATGATTGGAATTTGGAACTTTAGATGGAGGCCAAGACACCCTCCACATATGGACACTAGACTATCCCACGCCGACGCGGCTTTTCCCGATGAATTAGACGAAGAGTTTGATTCATTCCCTACGTCACGGTCATCGGATATCGTTAAGATGAGATACGATCGTTTAAGAAGTATCGGAGGAAAAGTTCAAAGTTTTGTAGGTGATCTTGCAACTCAAGGAGAGAGGTTTCAAAGTCTTTTAAGTTGGAGAGATCCAAGAGCTACAACACTTTTTGTTACATTTTGTTTTGTTGCTGCTATTGTTCTCTATGTTACTCCTTTTCAAGTTGTGTTACTGATCACTGGCTTCTATGTTTTGAGACATCCTAAATTCAGACAGAAACTTCCATCAGTTCCTCTCAATTTCTTTAGGAGATTGCCTGCTAGATCAGACAGCATGATATAA | 2313 | 0.4094 | MQKAPNPHEFALKETSPNIGAGAVTRDKLSCTYDLVEQMQYLYVRVVKAKDLPTKDVTGSLDPYVEVKLGNYKGLTKHFEKKSNPQWNQIFAFSKDRIQASVLEVIVKDKDVIADDFVGRVWFDLNDIPKRVPPDSPLAPQWYRLEDRKGEKAKGELMLAVWMGTQADEAFSDSWHSDAALVGSEAVANIRSKVYLSPKLWYVRVNVIEAQDLVPTDKSRYPEVFVKVALGNQFSRTRISQIKTINPIWNEDLMFVAAEPFEEPLVLTVEDRVAPNKDETLGKCMIPLHMVQRRLDHKPVNTRWHNLEKHLVVEGEKKDTKFASRIHLRVCLDGGYHVLDESTHHSSDLRPTAKQLWKSAIGILEVGIISAQGLMPMKTRDGRGTTDAYCVAKFGQKWIRTRTIVDSFSPKWNEQYTWEVFDPSTVITIGVFDNNHLQGGDKSKDSRIGKVRIRLSTLETDRVYTHSYPLLVLNPSGVKKTGEVQLAVRFTNSSYINMLYIYSTPLLPKMHYIHPLSVIHLDHLRHQATQIVSMRMSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMKVFAGLIAFGKWFDQICNWKNPITSILIHILFIILVLYPELILPTIFLYMFMIGIWNFRWRPRHPPHMDTRLSHADAAFPDELDEEFDSFPTSRSSDIVKMRYDRLRSIGGKVQSFVGDLATQGERFQSLLSWRDPRATTLFVTFCFVAAIVLYVTPFQVVLLITGFYVLRHPKFRQKLPSVPLNFFRRLPARSDSMI | 770 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g03090 | 770 | CDD | C2B_MCTP_PRT_plant | 41 | 165 | IPR047257 | - | |
| Trre7g03090 | 770 | Pfam | Plant phosphoribosyltransferase C-terminal | 615 | 770 | IPR013583 | - | |
| Trre7g03090 | 770 | Gene3D | C2 domain | 186 | 332 | IPR035892 | - | |
| Trre7g03090 | 770 | Gene3D | C2 domain | 40 | 163 | IPR035892 | - | |
| Trre7g03090 | 770 | FunFam | C2 domain-containing protein | 345 | 494 | - | - | |
| Trre7g03090 | 770 | FunFam | C2 domain-containing protein | 188 | 332 | - | - | |
| Trre7g03090 | 770 | Pfam | C2 domain | 362 | 470 | IPR000008 | - | |
| Trre7g03090 | 770 | Pfam | C2 domain | 201 | 307 | IPR000008 | - | |
| Trre7g03090 | 770 | Pfam | C2 domain | 41 | 133 | IPR000008 | - | |
| Trre7g03090 | 770 | CDD | C2C_MCTP_PRT_plant | 202 | 351 | IPR047258 | - | |
| Trre7g03090 | 770 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 362 | 494 | IPR035892 | - | |
| Trre7g03090 | 770 | ProSiteProfiles | C2 domain profile. | 23 | 143 | IPR000008 | - | |
| Trre7g03090 | 770 | ProSiteProfiles | C2 domain profile. | 181 | 305 | IPR000008 | - | |
| Trre7g03090 | 770 | ProSiteProfiles | C2 domain profile. | 345 | 468 | IPR000008 | - | |
| Trre7g03090 | 770 | PANTHER | PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 | 7 | 770 | IPR047259 | - | |
| Trre7g03090 | 770 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 353 | IPR035892 | - | |
| Trre7g03090 | 770 | Gene3D | C2 domain | 339 | 491 | IPR035892 | - | |
| Trre7g03090 | 770 | SMART | C2_3c | 202 | 300 | IPR000008 | - | |
| Trre7g03090 | 770 | SMART | C2_3c | 363 | 467 | IPR000008 | - | |
| Trre7g03090 | 770 | SMART | C2_3c | 41 | 137 | IPR000008 | - | |
| Trre7g03090 | 770 | FunFam | C2 domain-containing protein | 36 | 180 | - | - | |
| Trre7g03090 | 770 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 41 | 178 | IPR035892 | - | |
| Trre7g03090 | 770 | CDD | C2D_MCTP_PRT_plant | 363 | 487 | IPR047255 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g03090 | Trre-Chr7 | 28532743 | 28535055 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g03090 | 1 | 770 | Lipid Metabolism Gene Families | AT3G57880 | 79.587 | 0.0 | 1330 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g03090 | - | - | gmx:100788273 | 1400.96 |