Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03022 ATGGATTTGGAATCGGTTGGAGATTTAGCGATTCATTTGATTTTGGAAAATCTGAAACCCGAAGACATTGCAAGTATTTCATGTGTCAGTAACAGGTTTAAGTCTTTCACTTCCGATGATTCTATTTGGTCCAAAATCTGCTTCCATGAACTTTCTCTCACTCGACCCATTGATCATCTTGGAAATCCTCTTCCTTCCTTCAAGGAAGCTTATAGAACTTGGAGAGAAGCTTTTGTTATGTATCCCTGGTCTCTTGTTAAGCGTGTAAAAAGGTGTTGGGACAATTTAGAGACCTGGCTTACAAATAATTTTCCAGAAGCGAAGTTGACTCTTGGTGAAGGTGCATCGGAAGCTGAGATTCAAGAGTTGGAGGATGTCTTGAATGTTAAATTGCCTCTTCCTACAAGGATCCTTTACCGCTTACATAATGGGCAAGAGATTGAAAAACTAGATGTCGATACCTCTACCGACGCATTTGGCACTTCGTTGGGAATAATTGGCGGTTACTCCTTCTATGATCATTTGGTGAATGTTTATTTGTTACCTATAAGTCATGTAATTGAAGAAACCCAGCAAATTACAAACAACTTGGGGTTTTTAAGAAGATCCAAGTATGTTCTTGTGGCCGCTTCGTCCACGTACTCTGAGAAGTTGTTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGAACCAAGAAGCTTCTTAGCAATATAGATATGATGCCATGCGTTCCTCGAAATCTGATTAGTTTGGATTATGTGTCGGATAGCGGCAAGATACAGGATGGCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTACAACGCGGCTTTATCAAACTGATCGAAGAAGGACATGCCAAAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAACTGCTGTAACCAATGGTGTGCAGGTTCGCGCCTCTGCGTTGGTTATCCCTGAGTTGACTGATCTTCAAGATGACCGTGAGAAGTACTTATTTGCTTATTCAATCCGCATGTCCTTGCAACCTCAAGGATGCGTGATCAATGGAATATCCCACAGATCTTGCCAGCTTTATTGGAGGCACTGGCTCATCCATGCTAATGATGTTTTAGTATCTAATGTCGATGGAGAAGCTGTTATAGGAATGTACCCACTATTGCGTCCAGGTGACAAAGAATTTGTTTATCAGAGTTGCGCAGCTATACCAACATCATCAGGTTCCGTTGAAGGTTCCTTTACCTTTGTACCAGGAAGATTGGTAGAACCAAGAGGAGATCCTTTCATAGCTGCAGTTGCACGTTTCCCTCTCCAGCGGCCAGACTATATTTTCTGA 1338 0.4193 MDLESVGDLAIHLILENLKPEDIASISCVSNRFKSFTSDDSIWSKICFHELSLTRPIDHLGNPLPSFKEAYRTWREAFVMYPWSLVKRVKRCWDNLETWLTNNFPEAKLTLGEGASEAEIQELEDVLNVKLPLPTRILYRLHNGQEIEKLDVDTSTDAFGTSLGIIGGYSFYDHLVNVYLLPISHVIEETQQITNNLGFLRRSKYVLVAASSTYSEKLFFLNCTNGQLYVGTKKLLSNIDMMPCVPRNLISLDYVSDSGKIQDGMLLWLEEHGRRLQRGFIKLIEEGHAKSINLFPEEPPLCSTAVTNGVQVRASALVIPELTDLQDDREKYLFAYSIRMSLQPQGCVINGISHRSCQLYWRHWLIHANDVLVSNVDGEAVIGMYPLLRPGDKEFVYQSCAAIPTSSGSVEGSFTFVPGRLVEPRGDPFIAAVARFPLQRPDYIF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03022 445 Pfam ApaG domain 326 417 IPR007474 -
Trre7g03022 445 SUPERFAMILY F-box domain 11 78 IPR036047 GO:0005515
Trre7g03022 445 SUPERFAMILY SMI1/KNR4-like 92 222 IPR037883 -
Trre7g03022 445 Gene3D - 93 231 IPR037883 -
Trre7g03022 445 Gene3D - 6 92 - -
Trre7g03022 445 Pfam F-box domain 10 45 IPR001810 GO:0005515
Trre7g03022 445 Gene3D ApaG domain 302 444 IPR036767 -
Trre7g03022 445 PANTHER F-BOX PROTEIN SKIP16 1 445 - -
Trre7g03022 445 SUPERFAMILY ApaG-like 306 445 IPR036767 -
Trre7g03022 445 ProSiteProfiles ApaG domain profile. 304 445 IPR007474 -
Trre7g03022 445 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03022 Trre-Chr7 27453110 27456496 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03022 K10290 - gmx:100809876 670.618