Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03017 ATGCAAAACCTTTTACTTTCGCTATTGCAGCCAGCAGATTGGGACGATAGAGAGTACATTGAGGACCCTAACGATGTCAAACCAGAAGGATATGATTCAATTCGAGCTGAAATTCCCGATCCAAAAGCCAAGAAGCCTGTTGACTGGGATGATGAAGATGATGGACTTTGGAAGCCCCCCAAAGTTCCTAATCCGGCATACAAAGGACCGTGGAAACGAAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTACGTGTTGAAACCGATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCTGGTTCAATTTATGACAACATCTTAATTTGTGATGATCCAAAGTATGCAAAGCAAGCTGTGGAAGAATTTATGGTTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAAAGGAGGCGCAAAGGGCAAGAGAAGAGGGAGAAAGGAGGAGAAGAGAGAGGGACAGTAGATATGGAGATAAGAGGCGCCGTAGAAGGCCGGATCCCCACGAATACGATGATTATGAACATGATGAGCTTTGA 630 0.4365 MQNLLLSLLQPADWDDREYIEDPNDVKPEGYDSIRAEIPDPKAKKPVDWDDEDDGLWKPPKVPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILICDDPKYAKQAVEEFMVNNREAEKEAFEEAEKERRAREEKEAQRAREEGERRRRERDSRYGDKRRRRRPDPHEYDDYEHDEL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03017 209 MobiDBLite consensus disorder prediction 149 209 - -
Trre7g03017 209 Coils Coil 140 184 - -
Trre7g03017 209 Gene3D - 75 172 - -
Trre7g03017 209 PANTHER CALRETICULIN AND CALNEXIN 10 175 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre7g03017 209 MobiDBLite consensus disorder prediction 22 70 - -
Trre7g03017 209 FunFam Calreticulin 7 101 - -
Trre7g03017 209 MobiDBLite consensus disorder prediction 149 202 - -
Trre7g03017 209 MobiDBLite consensus disorder prediction 22 58 - -
Trre7g03017 209 SUPERFAMILY P-domain of calnexin/calreticulin 9 111 IPR009033 GO:0005509|GO:0005515
Trre7g03017 209 Gene3D Calreticulin/calnexin, P domain 7 74 IPR009033 GO:0005509|GO:0005515
Trre7g03017 209 Pfam Calreticulin family 10 52 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre7g03017 209 Pfam Calreticulin family 55 128 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre7g03017 209 PRINTS Calreticulin signature 76 95 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre7g03017 209 PRINTS Calreticulin signature 10 23 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre7g03017 209 PRINTS Calreticulin signature 38 60 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre7g03017 209 PRINTS Calreticulin signature 109 129 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03017 Trre-Chr7 27365402 27369418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03017 10 135 Miscellaneous Gene Families AT5G61790 40.244 1.75e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03017 K08057 - gmx:100802428 291.582