Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03002 ATGGCTGTCAACGACGCCGATCAATCCCACAAACCTCACAGGACCGCTCAAGCCGGTCCTAAAAAGAAGAACAAGTCCAAGAAGAAACACGATGGCGATGACGATGGTCAGATTATGCAAAACCCTAAAGCTTTCGCATATTCTTCATCGAAAAAAAATAAAAGGTTGCAATCACGCACCGCCGAGAAAGAACAGCGCCGTCTTCATGTTCCTATTATTGATCGCAGTTACGGTGAACCTCCTCCTTTCGTTATTGTTGTGCAGGGTCCTCCTCAGGTTGGGAAATCACTTTTGATTAAGTCTTTGATTAAGCATTATACAAAGCATAACTTGCCTGAAGTTCGTGGTCCAATTACAATTGTATCAGGAAAGCAAAGGCGGTTGCAATTTGTGGAATGCCCAAATGATATCAATGGCATGATAGATGCTGCTAAGTATGCTGATCTAGCACTTCTTCTTATAGATGGAAGTTATGGTTTTGAAATGGAAACATTTGAGTTTCTTAATATTTTGCAAGTTCATGGGTTTCCAAAGGTCATGGGGGTTCTTACTCATCTTGATCATTTCAAGGATGTTAAAAAGTTGAGGAAAACGAAACAACGGCTCAAACACCGATTTTGGACCGAAATATATGATGGAGCTAAATTGTTTTACTTATCGGGCCTTATTCATGGAAAATATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTCATATCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCATCCCTATGTTTTGGTGGATCGTTTTGAAGATATCACTCCTCCTGAACAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACACTTTATGGCTATCTTAGAGGTTGTAATTTGAAAAAGGGCAATAAGGTCCACATAGCTGGAGTGGGTGATTATAGTTTAGCTCATGCAACTGGTTTACCCGATCCATGCCCTCTTCCTTCTGCTGCCAAAAAGAAAGGACTGCGTGATAAAGAAAAGTTGTTTTATGCTCCCATGTCTGGCATTGGGGATCTTTTGTACGATAAAGATGCTGTGTACATAAATATTAATGATCACTTTGTTCAATTTTCAAAAGTTGATGATGAAAACTCTGCTATGACGAGCAAAGGAGAGGAGAGGGATGTAGGGGAGGTGTTGGTGAAATCTCTTCAGAATACCAAATACTCGATCAATGAAAAGCTAGAGAATAGCTTTATCACTCTTTTTGGCCAAAAGCAAAAAGTGTCACCAGATGCTCTAGGTGATGCACTTGGCACAAACAAGGATGTAGAGCAGGATGGAAATCTAGAAACTTTGGATAAATATCAGCCTGCAGCTGGTATGGGCGGTGAAGATAATAATGATATAGATTCAGATGGTTCAGAATCGTCTGATGATGATGAGGCCCATGGTTCTGATGATGATGGCGATGCAACAGATACTAAAGCTACAAATAAAGACTACTTAAATGAACAGATCGAGTTTCACAATGGAAGACGTAGGAGAAAAGCCATCTTTGGAAATGATGTTGATCAGAGTGATCTGATGGATTCAGAAGAGGAAGAGGAAGAGGATGAAGATGGGGCATCTTCCGGTTCAGAATCTTCAAAAGAGGATGAAGATGACAGCGATGATGATGATGATGACACACTTGAAGATGATAGGGGAAATGTTTCGAAGTGGAAGGAGTCGTTGGCTGAAAGAACTCTCGCACGAAAACCTTCTAGTCTGATGCAACTCGTGTATAGGGAATCTACTAATAATCCAACCTCTAAAAATGAAGAGAATGATAGTGGTGAGGATGACGAATTTTTTTATCCTAAAGATGAAAGGAAAAAGCAAAATAGTGGAGATGCACCGGATGATGAAATGGTCGATGCTGAGGATTGTTCCAAGTGTGCCAAACTTATAAGCCAGAAATGGGGTGAGAAAGATATTGGGGAGATTCGCAACCGTTTTGTGTCTGGGGATTTGGCAAAAGCTGCACTCAGAAATACACAGCAAAAGGCTAATACTGAAGAGGAAGATGAAGATGTCTATGGCGACTTTGAAGATTTAGAAACAGGGGAAAACTGTGAGATTTATCTGATAGATAATCCGACAACAACACAGAAGGGAGTTGATTTAGAAGCTGAGGAGCGAAGGCTTAAGAAACTTGCTCTCCGTGCAAAATTTGTTGCTCAATATGATGGTGACTCTGAGACACCTGAGGAAGATGCTGGAAACGAAAATGAAGCCAGCATTCATCGTGATCAACCCAATGAAAGTAACTATATTGACAAGATAAAGGAGGGTCTTGAGCTTCGAAAACAAATGAATATTGCTGAACTGAACGATCTTGATGAGGATACAAGATTAGAGCTAGAAGGCTTCCGAACAGGGACATACCTACGACTAGAGGTTCATAATGTTCCCTATGAAATGGTTGAACACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTTTAGGGGAGGAAAATGTCGGATACATGCAGGCCAGGTTAAAGCGGCATAGGTGGCACAAGAAAGTCCTGAAGACTAGAGATCCAATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACACCAGTTTATGCTATCGAGGATCACAATGGAAGGCATCGAATGCTAAAATACACTCCAGAGCACATGCACTGCCTTGCCATGTTTTGGGGCCCTCTTGCACCTCCCAACACTGGAATAGTTGCTGTTCAGACTTTATCAAACAATCAGGCAACTTTTAGGATTACCGCAACTGCAGTTGTTGTTGAGTTTAATCATGCTGCAAGGATAGTGAAGAAAATCAAATTGGTTGGCTATCCGTGCAAGATATTCAAGAAAACAGCACTTATCAAAGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGGGCAGCTATTCGAACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGTTGCAAAAGAAGAGTTAGGTAACAAGCCAAAAAGGAAGGGTGGGCAAACCAAAGAAGGGATTGCTAGATGCACTTTTGAAGACAAAATTTTGATGAGTGACATTGTTTTCCTGCGAGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACAGCATTGCAGCCACGCAACCAGACTTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGATCACAATCTTCCTATACCTGTAAACAAAGATTCTCTTTACAAGAAAATTGAAAGGAAACCTAGACAGTTCAATCCATTGGTGATTCCCAAGTCTCTACAGGCAAATCTTCCTTTTGCATCAAAACCTAAACATCCACCTAAGCGTAAAAGGCTTGGGCTTCAAGAGAAAAGGCAAAAGGGTGTTATCGTTGAACCTCGTGAGCGGAAAATTCGTGCTCTTGTTCAACACTTGCAGTTATTGGATAATGACAAGAAGAAAAAGCGGAAGCATAAGGAAATGGAAAAGAAAAAAGTTTGGGAAGAAGAGAAAAAGAAAGAGGAGTTGTTGTCAAAAAAGCGAAAGAGAGAGGAAAGACGAGACAAATACCGGAAAGAAGACAAGCTCAATAAGAAAAGTCGGAGAGCATAG 3588 0.4097 MAVNDADQSHKPHRTAQAGPKKKNKSKKKHDGDDDGQIMQNPKAFAYSSSKKNKRLQSRTAEKEQRRLHVPIIDRSYGEPPPFVIVVQGPPQVGKSLLIKSLIKHYTKHNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKYADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDHFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEQVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLAHATGLPDPCPLPSAAKKKGLRDKEKLFYAPMSGIGDLLYDKDAVYININDHFVQFSKVDDENSAMTSKGEERDVGEVLVKSLQNTKYSINEKLENSFITLFGQKQKVSPDALGDALGTNKDVEQDGNLETLDKYQPAAGMGGEDNNDIDSDGSESSDDDEAHGSDDDGDATDTKATNKDYLNEQIEFHNGRRRRKAIFGNDVDQSDLMDSEEEEEEDEDGASSGSESSKEDEDDSDDDDDDTLEDDRGNVSKWKESLAERTLARKPSSLMQLVYRESTNNPTSKNEENDSGEDDEFFYPKDERKKQNSGDAPDDEMVDAEDCSKCAKLISQKWGEKDIGEIRNRFVSGDLAKAALRNTQQKANTEEEDEDVYGDFEDLETGENCEIYLIDNPTTTQKGVDLEAEERRLKKLALRAKFVAQYDGDSETPEEDAGNENEASIHRDQPNESNYIDKIKEGLELRKQMNIAELNDLDEDTRLELEGFRTGTYLRLEVHNVPYEMVEHFDPYHPILVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDHNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQTLSNNQATFRITATAVVVEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKVAKEELGNKPKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRNQTWKGMRTVAELRRDHNLPIPVNKDSLYKKIERKPRQFNPLVIPKSLQANLPFASKPKHPPKRKRLGLQEKRQKGVIVEPRERKIRALVQHLQLLDNDKKKKRKHKEMEKKKVWEEEKKKEELLSKKRKREERRDKYRKEDKLNKKSRRA 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03002 1195 SMART aarp2cn2 231 317 IPR012948 GO:0005634|GO:0042254
Trre7g03002 1195 CDD BMS1 44 273 IPR037875 GO:0005525
Trre7g03002 1195 MobiDBLite consensus disorder prediction 579 593 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 475 508 - -
Trre7g03002 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 219 IPR027417 -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 604 627 - -
Trre7g03002 1195 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1179 IPR039761 GO:0042254
Trre7g03002 1195 SMART DUF663_2 706 1028 IPR007034 -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 742 757 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 1094 1120 - -
Trre7g03002 1195 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 80 245 IPR030387 -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 455 474 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 729 757 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 442 627 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 1141 1195 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 537 552 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 1 65 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 1141 1187 - -
Trre7g03002 1195 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 708 1029 IPR007034 -
Trre7g03002 1195 Coils Coil 1165 1185 - -
Trre7g03002 1195 Pfam AARP2CN (NUC121) domain 231 316 IPR012948 GO:0005634|GO:0042254
Trre7g03002 1195 FunFam BMS1 ribosome biogenesis factor 83 245 - -
Trre7g03002 1195 Gene3D - 83 245 IPR027417 -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 553 569 - -
Trre7g03002 1195 MobiDBLite consensus disorder prediction 513 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03002 Trre-Chr7 27175814 27184428 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03002 K14569 - gmx:100792176 1729.15