Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02969 ATGACAAACGCAAAAGGTGCAACCATGTTAATAGAAAGAAACAGCAACAATAATAACAGCAACAAAGTTCATAGACCAACCTTTGGTGCCTTTCTTCACTCCGAACCGACGTTATTTCACGGTTCGATCAACGAAGATGATCAAAACCGCGTCAGCAACGCCGCCGCGAGTCCTCGAACCTACTACGGCGACAGTAGCAGTAGCAACAATGCTTCACCTAGTTCCATGATGTCTCCATGGAATCAATCTACCTCACCTCTCAACAAATCACCATGGTTAATGCCATCTTCAGAAGCAATTAATCTCTTCCACAGTAGCCATCGTTACGATAACATCAACGACGATAGCTACTTCCCCGAAAACGGCCTTATCGGATCGCTTGTTCGCGAAGAAGGTCATATCTATTCGTTAGCGGTTTCCGGCGACTTATTATACACCGGTTCCGATAGCAAAAACATAAGGGTGTGGAAAGAACTTAAAGATTATACCGGTTTTAAATCAAGCAGTGGTTTGGTTAAAAATATTGTTATCTCCGATGGAAATATTTTCACCGGTCATCAAGATGGAAAAATCAGAGTATGGAAAAATTCTTCAAAAAATTCCAGAACTCATAAGCGCGTTGGAAGTTTACCAACTTTCAAAGATTATGTAAAAAGTTCGATGAATCCGAAGAACTATGTTGAAGTCCGGCGACGGAGAAACGCGGTGAAGGTGAAGCATTTCGACGCAATTTCGAGTTTGAGTTTGGATCAAGACGAAGGGTTGTTGTATTCGGGTTCTTGGGATAAAACTCTTAAAGTTTGGCGAATTTCTGATTTCAAATGTTTGGAATCGATTAACGCTCATGATGACGCGGTGAATGCGGTGGTTTATGCATTTGAAAGCTATGTTTTCACCGGCTCCGCCGACGGAACGGTGAAGATGTGGAAGAGGGAAATGGACGGAAGAGGGAAGAAAACGAAGCACGTGTTGGATAAGATTCTGTTAAAGCAAGAAAACGCTGTGACGGCTTTAACGGTTAACCGTTCATCCACGGTTATATATTGCGGTTCGTCGGATGGATTGGTTAACTTCTGGGAGCGTCAACAGAAGAATAGTCTCACTCATGGCGGCGTTTTAAAGGGACACAAACTCGCTGTCTTGTGTATGGCGGCGGCGGGGAATCTCGTTTTTAGCGGTTCTGCCGATAAGAATGTTTGTGTGTGGAAGCGCGATGAGACTGGGACCCATTTGTGTCTTTCGGTTTTAACGGGACATACCGGTCCTGTTAAATGCATTGCCATTGAAGAAAATGAGGTGGAGCTTGACGGAGAAAAGGATAATCAAAGGTGGATAGTTTACACCGGAAGTTTAGATAAGTCCGTGAAAGTATGGCGCGTGTCTGAACACGCGCCAGAGTTGAGATTATTCCAAAGTTGGACATCTCCAATTGCACCTTATTCTTCCCCGGGAACAATCAATGTCACTACAAATAGTAATAGGAACCGGTTGTAA 1494 0.4371 MTNAKGATMLIERNSNNNNSNKVHRPTFGAFLHSEPTLFHGSINEDDQNRVSNAAASPRTYYGDSSSSNNASPSSMMSPWNQSTSPLNKSPWLMPSSEAINLFHSSHRYDNINDDSYFPENGLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKELKDYTGFKSSSGLVKNIVISDGNIFTGHQDGKIRVWKNSSKNSRTHKRVGSLPTFKDYVKSSMNPKNYVEVRRRRNAVKVKHFDAISSLSLDQDEGLLYSGSWDKTLKVWRISDFKCLESINAHDDAVNAVVYAFESYVFTGSADGTVKMWKREMDGRGKKTKHVLDKILLKQENAVTALTVNRSSTVIYCGSSDGLVNFWERQQKNSLTHGGVLKGHKLAVLCMAAAGNLVFSGSADKNVCVWKRDETGTHLCLSVLTGHTGPVKCIAIEENEVELDGEKDNQRWIVYTGSLDKSVKVWRVSEHAPELRLFQSWTSPIAPYSSPGTINVTTNSNRNRL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02969 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 310 IPR001680 GO:0005515
Trre7g02969 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 310 - -
Trre7g02969 497 FunFam BnaA09g28200D protein 227 314 - -
Trre7g02969 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 403 IPR001680 GO:0005515
Trre7g02969 497 Gene3D - 225 324 IPR015943 GO:0005515
Trre7g02969 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 271 - -
Trre7g02969 497 SMART WD40_4 366 403 IPR001680 GO:0005515
Trre7g02969 497 SMART WD40_4 120 157 IPR001680 GO:0005515
Trre7g02969 497 SMART WD40_4 409 459 IPR001680 GO:0005515
Trre7g02969 497 SMART WD40_4 158 195 IPR001680 GO:0005515
Trre7g02969 497 SMART WD40_4 272 310 IPR001680 GO:0005515
Trre7g02969 497 SMART WD40_4 234 269 IPR001680 GO:0005515
Trre7g02969 497 SMART WD40_4 321 360 IPR001680 GO:0005515
Trre7g02969 497 SUPERFAMILY WD40 repeat-like 124 469 IPR036322 GO:0005515
Trre7g02969 497 Pfam WD domain, G-beta repeat 274 310 IPR001680 GO:0005515
Trre7g02969 497 Pfam WD domain, G-beta repeat 240 268 IPR001680 GO:0005515
Trre7g02969 497 Pfam WD domain, G-beta repeat 131 157 IPR001680 GO:0005515
Trre7g02969 497 Pfam WD domain, G-beta repeat 412 458 IPR001680 GO:0005515
Trre7g02969 497 Pfam WD domain, G-beta repeat 371 403 IPR001680 GO:0005515
Trre7g02969 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Trre7g02969 497 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 67 464 IPR045182 -
Trre7g02969 497 CDD WD40 131 459 - -
Trre7g02969 497 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Trre7g02969 497 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Trre7g02969 497 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Trre7g02969 497 MobiDBLite consensus disorder prediction 57 82 - -
Trre7g02969 497 Gene3D - 111 220 IPR015943 GO:0005515
Trre7g02969 497 Gene3D - 325 496 IPR015943 GO:0005515
Trre7g02969 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 369 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02969 Trre-Chr7 26618184 26619677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02969 238 458 Miscellaneous Gene Families AT5G08390 25.641 8.93e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02969 - - gmx:100790597 671.774