Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02887 ATGGTATCTCAAGCACTATCAGTTCCTGCAATTCCCACTTTCACTCTCGCTTCTTACTGTAGAATCCCTTCCCAACTTTCCTTTTCTCACAGAAACTCCTGCACGATATCTTCTTCCTTGCCAAGTGCCTATGGTCATTCATCTAAAATCGGTTCATCAAGTAAAACCGGTGCTTTTCGTTTAAAACTCGATGAGAAAAATATACATGATGTTAGTACAAGTTATGGTGTAATTGAAGCCAAGGGGAACCCGCCAGTATCACCAGCCATCATGACTCCGGGAGGAGCTCTTGATCTCTCGTCTGTCTTGTTCAGGAATCGTATAATATTTGTAGGACAGCCAATTAACTCACAAGTGGCTCAGAGAGTTATTTCGCAGCTTTTGACTCTGGCTGCTATTGATGCAGAAGCAGATATACTGATGTACATAAATTGCCCTGGTGGAAGCACTTATTCAGTTCTTGCAATTTATGATTGCATGTCTTGGATAAAGCCAAAGGTTGGTACAGTATGTTTCGGAGTAGCTGCAAGCCAAGGAACACTTCTCCTTGCAGGTGGGGAGAAGGGAATGCGCTATTCAATGCCAAATGCACGCATTGTGATGAATCAACCACGGTGTGGATTTGGGGGTCATGTTGAGGATGTGAAACGTCTAGTGAATGAAGCTGTTCAATCCCGCTATAAAATGGAGAAGATGTTTAGTGCATTCACCGGACAGCCATTGGAGAAGGTGCAAGAGTACACAGATAGGGACAGTTTTCTATCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTAGAAACAGAGTATTGA 822 0.4319 MVSQALSVPAIPTFTLASYCRIPSQLSFSHRNSCTISSSLPSAYGHSSKIGSSSKTGAFRLKLDEKNIHDVSTSYGVIEAKGNPPVSPAIMTPGGALDLSSVLFRNRIIFVGQPINSQVAQRVISQLLTLAAIDAEADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIVMNQPRCGFGGHVEDVKRLVNEAVQSRYKMEKMFSAFTGQPLEKVQEYTDRDSFLSVSEALEFGLIDGVLETEY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02887 273 FunFam ATP-dependent Clp protease proteolytic subunit 78 273 - -
Trre7g02887 273 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 82 272 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02887 273 PRINTS Clp protease catalytic subunit P signature 169 186 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02887 273 PRINTS Clp protease catalytic subunit P signature 247 266 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02887 273 PRINTS Clp protease catalytic subunit P signature 98 113 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02887 273 PRINTS Clp protease catalytic subunit P signature 138 158 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02887 273 PRINTS Clp protease catalytic subunit P signature 190 209 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02887 273 CDD S14_ClpP_2 98 268 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02887 273 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 71 272 IPR023562 -
Trre7g02887 273 SUPERFAMILY ClpP/crotonase 97 271 IPR029045 -
Trre7g02887 273 Pfam Clp protease 97 271 IPR023562 -
Trre7g02887 273 Gene3D - 81 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02887 Trre-Chr7 25298051 25302079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02887 K01358 - gmx:100799710 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02887 7 25298051 25302079 Trre7g02887 7 25298051 25302079 ECH