Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02872 ATGGAGGAAAAACGTCCTCCATCCGCCGTCGATACACCGGCATCAGAAACACCACCAACTCGCCGCCGTGCCGGAGGTAACAAAAGAAAATCCGGCTCACTCAACGCCTCCAATTCCTCTTCAACTTCCTCCAAACGCATTACTCGCGAGAAAGCTTCACCTCTTCACCATCCTCCTCTCCATAGCGGTCCCTTAACTAGGGCTCGTCAAATCCCTAACAATTCCTCAACCGCATCTACTTCCACCGTCGTCGGTTCCGCTTCTGCTCCCGCCGCGGTTAAACATGCTCCACAGACACAGGCTTTGGCTGTGGCGGCGGAGCAGCTTAAGAAGGAGAGCGAGTGGGAGTCTCTGGAAGCTGAAATTGAGGCTGAATTCAAAACTATTAGATCTCGTGATGCTAACGCTCATGTTGTTCCTACTCATTGTGGTTGGTTTTCATGGTTGAACATCCATTCAATTGAGAAACGTATGATGCCTTCTTTCTTTAATGGAAAAACTGAAAATCGAACTCCTGATAAATACATGGAAATACGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAACATTCAAATCGAATTGAAAGATTTATCTGAGCTTGACATTGGGGATCTGGATGCTAGGCAAGAGGTAATGGAATTTCTTGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAACGGATTCTGCTGTGGCCAGCACCTGCGATGATGGGGAAGCCGAAAAGAAATCCTTGCTTGAAAAATTCTATCACTTTGATACTCTCCAATTATGCCCGCCTGCTATCCAGAAGACTAGCTTAATGACTCCTGTTATGAGCTCTGGCTTGTTTCCAGAGTCAGCGATTGCTGAAGAGTTGGTGAAACAAGAGGGCCCAGCAGTCGAGATGCTTGAGTACCATTGCAATTCCTGTTCTGGTGATTGTTCTCGCAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATCTGTGTACGGACTGCTTCAATAATAGAAAATTTGGCTCCGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGCTGCAGGGGTTAGTAGTGGAAAGTGGACGGATCAGGAGACACTTCTGCTCCTTGAAGCATTAGAGCTTTATAAAGAAAATTGGAATGAAATTGCAGAGCATGTTGGAACAAAATCAAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTGTGGACGCCTTTTTGGACTGTGATGATGATGTTGATGCTGGTTCCAAAGAAACTGCAGATCCAGCTGCAACAAACAACACTTTGTCTATAGATAAAGACAAAGATACTATAGATAAAGACAAAGATAAAAAAGATGAAGACAAAGATAAAAAAGATGAAGACAAAGATAAAGATGCTTCAGAAATTATTGAGAATGACACTAGTGATAGCATCAAAGGCCATGATGAAACTTCAAAGGCTGAAGATGTTACAGTGAAAGATAATCAAGAGGAGACTCCAAAGTTACCCGATGGTAGTGACGAGAAAACTAGTGAGGAAACTTCTAAATTAGAAGATGATATTAAAGCAAAATTGGGTGAGGAAGTAGGTAATGACTGTGTTTTTAATGCTCTTAAGGATGCATTTGCAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCATCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTCCTTTCACAGTTGGTGGGTTCTGACATGGCTGTTGCTTCAGCTCATAACTACATAAAATCCTTGTCTGGAAATACTCCTGGCACTGAGATTGCTTCAAGGTGTTGCTTTCTTCTAGAAGATCCGCCAGACGATAAGAAGGAAACAACTACTTCTGAGAGGGATTTTGAAAGAGAGGGAGATCAGACTGACAAGAGTGTACAACAGGATACAGCAATGTTAGATGATAAAGGTTTAGAAAACGATCCCCAGAAAACAAAAATTGCCGGTGATGCTTCAGAAGACAAGATACATCTGGCTTCTACAGATGGTGGAATCTCAGAAAAATCTATTTCTTCGAAGGGGCTGGAAATGATTAATCATGACTGTGGGCTTGACAATGGTAATGACCCCAGCATTTCAAAGGCACCCAAAGATCAAGCTCAGGGTACTCTGCATAATCTAGGTGGTTCAACATCCAAAGCCGAAATTCCACCTAGTTCTGAGGAGGTTCAAGAGGGAACTTCAAAAGAGGAACCTTGCCATCCTATAGAGGAACAAAAAGAAGGAAGTGTGTCTGATTCGCATCCATCTGAGAAGAATGGACTTCAACAGACAATTAAATCCAATTTACCAGTTGAACTGCCAAAGCCTGTAGAGACACTCAAATATGATGAAATGGCGTCTGATAAGAGCAAGCCTCAAAAACAGCTATCTACAAATGCAGTCTCTGAGTCTCAGAAAACTACAGACTCTGCAATGGATGTTGATGTGGTTTCTAATTCCTTGCCATCAAAGATTGACTCCGAGCCACTAATATCTTCCCAAGATAATGGGACACAAAAGGATGTAGATATGGTGTCACCTTCACAGCCAATTAGATCGGATTTGGGTGCTGAAAATGGTGCAAGTGCAGAGGCAGTTGAAGATCATGCAAGAAATGGTATGGAAGTGAAGAATGACGGTACAAAGACTAAACAGGACAGTAGCTTTGAGAAAGTGAAACGTGCAGCTGTTTCTACACTAGCGGCAGCAGCAGTGAAGGCAAAACTTCTAGCAAATCAAGAAGAAGATCAAATCCGACAACTTACTTCATTATTGATAGAGAAGCAGCTATATAAGTTGGAAGCGAAGTTGGCTTTTTTCAATGATACAGAAAATGTGGTGATGAGAGTAAAGGAACTTTTAGAGCGGTCGCGGCATAAGCTTTATCATGAACGTGCTCTGATTATTGCATCCCGCCTTGGTGTACCGGGTTCCTCGTCCAGAGGTTTACCATCCATAGTTACTAAAGCTATTAATTACACAAATTCACTACCAAGACCACCAATCACCATGAATCCCCAAGGGCCACTGATTTCTAGACCTGTGAGCACCACAGGTGCTACCCTTCCAAACCCATCAATGTCTGCAACTGCAGCAGGAAGTTCAGTTCGGCCATCCAGCCAAGAAAACCTTTCTTCTGTTGGGACAAAATAA 3159 0.4286 MEEKRPPSAVDTPASETPPTRRRAGGNKRKSGSLNASNSSSTSSKRITREKASPLHHPPLHSGPLTRARQIPNNSSTASTSTVVGSASAPAAVKHAPQTQALAVAAEQLKKESEWESLEAEIEAEFKTIRSRDANAHVVPTHCGWFSWLNIHSIEKRMMPSFFNGKTENRTPDKYMEIRNWIMKKFHSNPNIQIELKDLSELDIGDLDARQEVMEFLDYWGLINFHPFPSTDSAVASTCDDGEAEKKSLLEKFYHFDTLQLCPPAIQKTSLMTPVMSSGLFPESAIAEELVKQEGPAVEMLEYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGSGMSSLDFILMEPAEAAGVSSGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIVDAFLDCDDDVDAGSKETADPAATNNTLSIDKDKDTIDKDKDKKDEDKDKKDEDKDKDASEIIENDTSDSIKGHDETSKAEDVTVKDNQEETPKLPDGSDEKTSEETSKLEDDIKAKLGEEVGNDCVFNALKDAFAAVGYSPEPEGPSSFAEVGNPVMALAAFLSQLVGSDMAVASAHNYIKSLSGNTPGTEIASRCCFLLEDPPDDKKETTTSERDFEREGDQTDKSVQQDTAMLDDKGLENDPQKTKIAGDASEDKIHLASTDGGISEKSISSKGLEMINHDCGLDNGNDPSISKAPKDQAQGTLHNLGGSTSKAEIPPSSEEVQEGTSKEEPCHPIEEQKEGSVSDSHPSEKNGLQQTIKSNLPVELPKPVETLKYDEMASDKSKPQKQLSTNAVSESQKTTDSAMDVDVVSNSLPSKIDSEPLISSQDNGTQKDVDMVSPSQPIRSDLGAENGASAEAVEDHARNGMEVKNDGTKTKQDSSFEKVKRAAVSTLAAAAVKAKLLANQEEDQIRQLTSLLIEKQLYKLEAKLAFFNDTENVVMRVKELLERSRHKLYHERALIIASRLGVPGSSSRGLPSIVTKAINYTNSLPRPPITMNPQGPLISRPVSTTGATLPNPSMSATAAGSSVRPSSQENLSSVGTK 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02872 1052 Gene3D - 297 346 IPR043145 -
Trre7g02872 1052 CDD SANT 378 403 IPR001005 -
Trre7g02872 1052 ProSiteProfiles SWIRM domain profile. 137 234 IPR007526 GO:0005515
Trre7g02872 1052 MobiDBLite consensus disorder prediction 756 771 - -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 420 515 - -
Trre7g02872 1052 Pfam Myb-like DNA-binding domain 360 402 IPR001005 -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 1 83 - -
Trre7g02872 1052 Pfam SWIRM-associated region 1 901 978 IPR032451 -
Trre7g02872 1052 ProSiteProfiles Zinc finger ZZ-type profile. 300 354 IPR000433 GO:0008270
Trre7g02872 1052 SMART sant 358 406 IPR001005 -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 642 663 - -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 30 48 - -
Trre7g02872 1052 SUPERFAMILY RING/U-box 295 352 - -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 607 663 - -
Trre7g02872 1052 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 360 396 IPR017930 -
Trre7g02872 1052 SMART zz_5 299 343 IPR000433 GO:0008270
Trre7g02872 1052 Gene3D - 143 228 IPR036388 -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 999 1052 - -
Trre7g02872 1052 CDD ZZ_RSC8 303 347 IPR041984 -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 1011 1052 - -
Trre7g02872 1052 SUPERFAMILY Homeodomain-like 144 226 IPR009057 -
Trre7g02872 1052 ProSiteProfiles SANT domain profile. 357 408 IPR017884 -
Trre7g02872 1052 Pfam Zinc finger, ZZ type 302 337 IPR000433 GO:0008270
Trre7g02872 1052 FunFam SWI/SNF complex subunit SMARCC2 isoform C 358 408 - -
Trre7g02872 1052 SUPERFAMILY Homeodomain-like 357 405 IPR009057 -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 732 755 - -
Trre7g02872 1052 PANTHER SWI/SNF COMPLEX-RELATED 53 973 - -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 689 845 - -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 67 83 - -
Trre7g02872 1052 ProSiteProfiles Myb-like domain profile. 354 404 IPR001005 -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 793 845 - -
Trre7g02872 1052 Gene3D - 357 408 - -
Trre7g02872 1052 ProSitePatterns Zinc finger ZZ-type signature. 305 331 IPR000433 GO:0008270
Trre7g02872 1052 Pfam SWIRM domain 140 225 IPR007526 GO:0005515
Trre7g02872 1052 MobiDBLite consensus disorder prediction 436 515 - -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 700 731 - -
Trre7g02872 1052 MobiDBLite consensus disorder prediction 607 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02872 Trre-Chr7 25066697 25072222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02872 303 400 EF-hand Containing Proteins AT3G07740 37.383 1.47e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02872 K11649 - gmx:100799723 1305.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02872 7 25066697 25072222 Trre7g02872 7 25066697 25072222 ECH