Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02870 ATGGCTCAGCCGCTTGTCAAGAAAGACGATGACCGTGACGACGAAGCTGATTATTCCCCTTTCATGGGAATTGAAAAGGGGGCTGTTCTTCAAGAGGCCAGGGTTTTTAATGACCCACAACTAGATGCTAGAAGATGTTCACAGGTTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAGGTTGAAGCCACAGAAGTTTTCTTTTCTGTTACCAAGCTTTTCCAGTCTCGAGATCTTGGGTTGAGGAGAATGGTCTACCTGATAATAAAGGAGCTCTCCCCCTCTGCAGATGAGGTTATTATTGTCACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTTTGTCGCATCACGGATGGAACTCTCCTTACCCAAATTGAGCGGTATTTGAAACAAGCAATTGTTGACAAGAATCCAGTTGTTGCAAGTGCGGCCCTAGTTAGTGGTATTCATCTACTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTGCAATCAAGAGCAGCTCTTGTACAATTTCATGCACTGGCTTTGCTACATCAGATACGACAGAATGACCGACTAGCAGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAAGTGTTCGCTCACCTTTGGCCCAGTGTCTCTTGATCCGTTATACAAGTCAGGTTATTCGTGAGTCAGGAAATACTACACAATCAGGAGACCGCCCCTTCTATGATTTTCTTGAAAGTTGCCTTCGTCACAAGTCAGAAATGGTGATTTTTGAAGCTGCTAAGGCAATTACAGACCTTAATGGGGTAACTAGCCGAGAATTAACTCCAGCAATTACTGTTCTTCAGCTCTTCCTAAGTTCTTCCAAGCCAGTTTTGAGATTCGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCTATTACTACTCTTTTGAAGACAGGAAATGAATCAAGTGTGGATCGCCTCATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTCGAAGCAATAAGATCATTGTGTTTGAAGTTTCCTTTAAAATATAGATCTCTGATGAATTTCCTGAGTAACATTCTTAGGGAAGAAGGTGGTTTCGACTACAAGAAAGCAATTGTTGATTCAATAGTGATTCTTATTAGAGATATCCCTGATGCCAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGACTGTGAATTCACTTACCTGTCTACACAGATACTCCACTTCCTTGGAATTGAAGGACCAAAAACAGTGGACCCGAGCAAATATATTCGGTATATTTATAACAGAGTACATCTTGAGAATGCAACTGTCAGGGCCAGTGCTGTGAGCACACTGGCCAAATTTGGCGCTTCTGTTGATGGATTAAAGCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTTCGCGATAGAGCCACCCTTTATCTGAACACCCTTGGAGGTGATATTGAGATTGATAAAGATGTGAGGGACTTCCTCTTCGGCTCACTTGATATCCCGCTCGTCAATCTGGAGACTAGTTTGAAAAAATATGAGCCTTCGGAAGAGGCTTTTGACATTAATTCGGTGCCTAGGGAGGTCAAGTCTCAGCCTAATGCAGAGAAGAAGGCCCCTGGTAAAAAGCCTGGTTTGGGTGCTCCTCCTAGTGGCCCCCCATCCACTGTAGATTCATATGAAAGGCAACTTCTGTCAATTCCTGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTCGATACACATGTTGTGTTTCAGTACAACTGCACAAATACGATACCTGAACAACTACTGGAAGATGTTATTGTAATTGTGGATGCTTCAGAAGCAGAAGAATTTTCTCAGGTCATCTCCAAGCCCCTCAGATCTCTTCCTTATGACTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCTGAGGGATTGCCAACAACTGGAAAGTTTTCTAACATTCTGAAATTTATTGTTAAAGAGGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGCGTTGAAGATGAATACCAACTGGAGGATCTAGAAGTTGTTGCGGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAACGCATGGGAAACCTTGGACCCTGATACTGAACGAGTGGATGAATATGGTCTTGGCACAAGGGAAGGCTTGTCTGAAGCTGTAAATACCGTCATCAATATTCTGGGCATGCAACCTTGTGAGGGCACAGAAACAGTCCCGCCCAATGCAAGGTCACACACATGCTTATTGTCGGGTGTATTCATAGGGGGTGTGAAGGTACTTGTGCGGTTGTCTTTTGGACTTGATGGTGCAAAGGAGGTTGCAATGAAACTGGCTGTTAGATCCGATGATGTAAATGTCAGCGATGCCATCCATGAGATTGTGGCTAGCGGCTAG 2652 0.434 MAQPLVKKDDDRDDEADYSPFMGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESGNTTQSGDRPFYDFLESCLRHKSEMVIFEAAKAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTVDPSKYIRYIYNRVHLENATVRASAVSTLAKFGASVDGLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDIEIDKDVRDFLFGSLDIPLVNLETSLKKYEPSEEAFDINSVPREVKSQPNAEKKAPGKKPGLGAPPSGPPSTVDSYERQLLSIPEFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDTHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSQVISKPLRSLPYDSPGQTFVAFEKPEGLPTTGKFSNILKFIVKEVDPTTGEAEDDGVEDEYQLEDLEVVAADYILKVGVSNFRNAWETLDPDTERVDEYGLGTREGLSEAVNTVINILGMQPCEGTETVPPNARSHTCLLSGVFIGGVKVLVRLSFGLDGAKEVAMKLAVRSDDVNVSDAIHEIVASG 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02870 883 PIRSF Gamma-COP 7 881 IPR017106 -
Trre7g02870 883 FunFam Coatomer subunit gamma 333 541 - -
Trre7g02870 883 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Trre7g02870 883 SUPERFAMILY Clathrin adaptor appendage domain 613 767 IPR013041 -
Trre7g02870 883 MobiDBLite consensus disorder prediction 581 618 - -
Trre7g02870 883 FunFam Coatomer subunit gamma 23 316 - -
Trre7g02870 883 Gene3D Coatomer, gamma subunit, appendage domain 613 764 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Trre7g02870 883 Gene3D - 765 881 IPR012295 -
Trre7g02870 883 PANTHER COATOMER SUBUNIT GAMMA 1 881 IPR017106 -
Trre7g02870 883 FunFam Coatomer subunit gamma 611 764 - -
Trre7g02870 883 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 766 880 IPR032154 -
Trre7g02870 883 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 768 880 IPR009028 GO:0006886|GO:0016192|GO:0030117
Trre7g02870 883 Gene3D - 336 552 IPR011989 -
Trre7g02870 883 Gene3D - 23 316 IPR011989 -
Trre7g02870 883 SUPERFAMILY ARM repeat 30 583 IPR016024 -
Trre7g02870 883 FunFam Coatomer subunit gamma 765 881 - -
Trre7g02870 883 Pfam Coatomer gamma subunit appendage platform subdomain 618 763 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02870 Trre-Chr7 25038780 25045531 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02870 K17267 - gmx:100789362 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02870 7 25038780 25045531 Trre7g02870 7 25038780 25045531 ECH