Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02783 ATGGATGGAAAATTACCATGGACATTGCCTACTGATCAAAAGTTTTTTGACGATATCACAACTATAACATCTGATCCTGGGAAGAAGAATGCTGTTGTCATGGGTAGAAAATCATGGGAGGCTATCCCTCCTGAGAACAGGCCTCTCAGTGGTCGTCTTAACATTATTCTAACTCGCTCGGGTACTTTTGATATTGCAACTGCAGAGAATGTTCTTTTATGTGGAAGTGTGTCTTCTGCTATGGAACTATTGGCTTCTTCTCCTTATTGTCTGTCAATTGAGAAAGTATTTCTTACAGGAGGGGGTGAGATATTTAGAGAGGCTCTTCATGGACCTGGATGTGAAGCCATCCATATTACAGAAATTGAAGCAAGCATTGAGCGTGACACTTTTATGCCTCGAATTGATTTCTCTGTATTTCATCCGTGGTATTCATCTTTCCCTTTGGTGGAAAATGGACTTCGCTATTCTTTTACCACTTATGTGCGAGTAAGGAGTTCAACAGAAGAATCCCAGGGTCTGAATACTGATCCAATTCTTTATGATAATTCAAAACCTCTAAAGTTTGAGGTCAAGAATTTTTCTTTTCTTCCTAAGTTTATTTTTGAGAGACATGAAGAGTACAAGTATCTTAGATTAGTTGAAGAAATCATTTCTGAAGGTACAACTAAGGATGATAGGACGGGGACTGGTACTGTGTCCAAATTTGGTTCCAAGATGAGATTTAATCTGCGTAGAAGCTTTCCACTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTTCTTTGGTTTATCAGTGGCTCAACAAATGCAAAGGTGCTGCAGGAAAAAGGCATTCATATATGGGACGGCAATGCGTCGAGAGAATACCTTGATAGCATTGGTTTGAAAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATACTAATATGCATGAAGATTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAATAAGATCTATCATAATCCTGATGACCGGCGTATCATCCTCTCAGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCGCCTTGCCACATGTTTGCGCAGTTCTATGTGGCAAATGGGGAGTTATCTTGTCAAATGTATCAAAGATCTGCCGACATGGGCCTGGGCGTGCCATTTAACATCGCATCTTATGCACTCTTGACGTGCATGATTGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATCGGGGACGCACATGTTTACCGCAATCATGTGAAGCCTTTGCAGGAACAGCTTCAAAACCTGCCAAAACCTTTTCCAATTTTGAAGATAAATCCAAATAAGAAGGATATAGATTCTTTTGCTGCTGCTGATTTCAAGCTCATAGGCTATGAACCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1473 0.4046 MDGKLPWTLPTDQKFFDDITTITSDPGKKNAVVMGRKSWEAIPPENRPLSGRLNIILTRSGTFDIATAENVLLCGSVSSAMELLASSPYCLSIEKVFLTGGGEIFREALHGPGCEAIHITEIEASIERDTFMPRIDFSVFHPWYSSFPLVENGLRYSFTTYVRVRSSTEESQGLNTDPILYDNSKPLKFEVKNFSFLPKFIFERHEEYKYLRLVEEIISEGTTKDDRTGTGTVSKFGSKMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGLKEREEGDLGPVYGFQWRHFGARYTNMHEDYSGQGFDQLLDVINKIYHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVKPLQEQLQNLPKPFPILKINPNKKDIDSFAAADFKLIGYEPHQKIEMKMAV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02783 490 PIRSF DHFR-TS 1 490 IPR012262 GO:0004146|GO:0004799|GO:0006730
Trre7g02783 490 PRINTS Thymidylate synthase family signature 367 382 IPR000398 GO:0004799|GO:0006231
Trre7g02783 490 PRINTS Thymidylate synthase family signature 248 269 IPR000398 GO:0004799|GO:0006231
Trre7g02783 490 PRINTS Thymidylate synthase family signature 423 440 IPR000398 GO:0004799|GO:0006231
Trre7g02783 490 PRINTS Thymidylate synthase family signature 385 411 IPR000398 GO:0004799|GO:0006231
Trre7g02783 490 PRINTS Thymidylate synthase family signature 341 360 IPR000398 GO:0004799|GO:0006231
Trre7g02783 490 NCBIfam thymidylate synthase 209 490 IPR000398 GO:0004799|GO:0006231
Trre7g02783 490 Pfam Dihydrofolate reductase 2 163 IPR001796 GO:0004146|GO:0046654
Trre7g02783 490 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 200 490 IPR036926 -
Trre7g02783 490 ProSitePatterns Thymidylate synthase active site. 352 380 IPR020940 GO:0004799|GO:0006231
Trre7g02783 490 CDD DHFR 2 162 IPR001796 GO:0004146|GO:0046654
Trre7g02783 490 Hamap Thymidylate synthase [thyA]. 207 490 IPR000398 GO:0004799|GO:0006231
Trre7g02783 490 Gene3D Dihydrofolate Reductase, subunit A 1 164 IPR024072 -
Trre7g02783 490 FunFam Possible thymidylate synthase 201 490 - -
Trre7g02783 490 SUPERFAMILY Dihydrofolate reductase-like 2 163 IPR024072 -
Trre7g02783 490 Pfam Thymidylate synthase 209 490 IPR023451 -
Trre7g02783 490 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 163 IPR001796 GO:0004146|GO:0046654
Trre7g02783 490 PANTHER THYMIDYLATE SYNTHASE 1 10 490 IPR045097 GO:0016741
Trre7g02783 490 CDD TS_Pyrimidine_HMase 210 443 IPR023451 -
Trre7g02783 490 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 188 490 IPR036926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02783 Trre-Chr7 24110965 24114683 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02783 K13998 - gmx:100786311 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02783 7 24110965 24114683 Trre7g02783 7 24110965 24114683 ECH