Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02768 ATGTCCGCCTCCACCGACCGTTTCGCTCTTCCATGTTTTGAAGGATTTTCTGGTAGTAGTGATGAGAAAAGAGAAAGAAGATCTTTGAAAAACAAAGCTCTCAATGCATCTTCTAAGTTTAAGCATTCTCTTAAGAAAAAGAGTGCTAGAACAAGAAAAAGTGATGTTCGAGTTAGTTCTGTTTCAATTGAAGATATTCGTGATGTTGAAGAGCTTCAAGCTGTTGATCAGTTTCGTCAATCGTTAATCATCGATGAATTGCTTCCTCAAAAACATGATGATTATCATATCATGTTAAGATTTCTTAAAGCAAGAAAGTTTGATATTGAAAAAGCAAAGCAAATGTGGGCTGATATGCTACAATGGAGGAAGGAATTTGGTGCTGATACAATTATGGAGGATTTTGAGTTTAATGAATTAGATGAAGTTGTGAAGTATTATCCACAAGGTAATCATGGTGTTGATAAGGAAGGAAGGCCTGTTTACATTGAAAGGCTTGGAAAAGTCGATCCAAACAAACTTATGCAAGTTACAACTATGGATAGATATGTGAAGTATCACGTACGGGAGTTTGAGAAATTGTTTGCGATAAAGTTTCCTGCTTGTTCGATTGCTTCCAAGAAGCATATAGATTCAAGCACGACAATCTTAGATGTTCAAGGCGTGGGCCTTAAGAACTTTACCAAATCTGCCCGCGAACTCATAATGCGATTACAAAAGATTGACGGTGACAATTACCCTGAGACTCTTTGCCAAATGTTTATCATCAATGCTGGCCCTGGGTTTAGGATGCTGTGGAACACTATCAAATCGTTTCTCGATCCCAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAATACCATAGCAAATTGCTTGAAGTAATCAATGCCAGCGAGTTGCCAGAATTCTTGGGAGGTACCTGCACATGTTTAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAATAACCCTGAAATCATGAAGATCATTCTCAGTGGGGAAGCAAGGCGGCCAAGGCAGGTCGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCCAAGCCACGATGCCCAATGGTAAAAGGCAGTGATACATCCACAGCTGAATCGGGGTCTGACGCTGAAGATATAGCTTCTCCAAAAACGGTGAAGAGTTACTCACACCTGAGGTTGACCCCTGTTCGTGAGGAAGCAAAGGTAGTTGGAAAGTCAAGCAATGCTGTTAGTGGTAACTTAGCTGGGTATCACGAATACATTCCAATGGTAGACAAAGCTGTTGATGCTGTCTGGAAGAAACAAGCATCACTCCAGAGGTCTCCTAGTACAAAAGGAACACCTCCCCTTTCTGATACTATAAAACCACCAGAAGGTATTCGAGCTCGGATTTGGGTAGCCCTGACTGTTTTCCTTTTAACCATGTTTACTCTCTTCCGTTCACTTGCATATCGCGTGAACAAGAAACTTCCTGTTGTATCATCTAAAAATTATCAGAGTACTTTAGAGCTAACTCTTGATACAACAAACAAGGAAAACTATTGTTCTTCGCCAACTCCAGCATCTACAGAGACACGAGTCTATTCATCCATCATGAAAAGGTTAGGTGAACTTGAAGAGAAGGTTGACAGACTAAAAGCTAAGCCATCTGAGTTGCCTAGACAGAAAACAGAATTACTAAATGCTGCTGTCTACCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAGCTAAAAAGGCTCTCTACGAAGCGTTAATCAGGCAAGAAGAGCTGTTTGCTTACATTGATAATCAAGAGGAAGTTAAGTTACGGAAGAAGTTTTGCTGGTGA 1842 0.4066 MSASTDRFALPCFEGFSGSSDEKRERRSLKNKALNASSKFKHSLKKKSARTRKSDVRVSSVSIEDIRDVEELQAVDQFRQSLIIDELLPQKHDDYHIMLRFLKARKFDIEKAKQMWADMLQWRKEFGADTIMEDFEFNELDEVVKYYPQGNHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVREFEKLFAIKFPACSIASKKHIDSSTTILDVQGVGLKNFTKSARELIMRLQKIDGDNYPETLCQMFIINAGPGFRMLWNTIKSFLDPKTTSKIHVLGNKYHSKLLEVINASELPEFLGGTCTCLDQGGCLRSDKGPWNNPEIMKIILSGEARRPRQVVKVLNSEGKVIAYAKPRCPMVKGSDTSTAESGSDAEDIASPKTVKSYSHLRLTPVREEAKVVGKSSNAVSGNLAGYHEYIPMVDKAVDAVWKKQASLQRSPSTKGTPPLSDTIKPPEGIRARIWVALTVFLLTMFTLFRSLAYRVNKKLPVVSSKNYQSTLELTLDTTNKENYCSSPTPASTETRVYSSIMKRLGELEEKVDRLKAKPSELPRQKTELLNAAVYRVDALEAELIAAKKALYEALIRQEELFAYIDNQEEVKLRKKFCW 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02768 613 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Trre7g02768 613 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Trre7g02768 613 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Trre7g02768 613 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Trre7g02768 613 Coils Coil 532 552 - -
Trre7g02768 613 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Trre7g02768 613 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 602 - -
Trre7g02768 613 SMART sec14_4 139 310 IPR001251 -
Trre7g02768 613 Gene3D - 60 126 - -
Trre7g02768 613 SUPERFAMILY CRAL/TRIO domain 139 333 IPR036865 -
Trre7g02768 613 SUPERFAMILY CRAL/TRIO N-terminal domain 69 135 IPR036273 -
Trre7g02768 613 Gene3D - 127 337 IPR036865 -
Trre7g02768 613 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Trre7g02768 613 FunFam SEC14 cytosolic factor 127 339 - -
Trre7g02768 613 CDD SEC14 140 308 IPR001251 -
Trre7g02768 613 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02768 Trre-Chr7 24000131 24003974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02768 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 1.56e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02768 K26544 - gmx:100784405 963.37