Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02737 ATGGGAACCTTAATTGATAGATTTGATGAACATGATGGACCTGTTAGAGGCGTTCATTTTCACAATTCTCAACCGCTTTTTGTATCTGGAGGGGATGATTACAAGATTAAGGTCTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTCTAGGACACCTTGATTACATTCGTACTGTGCAATTTCATCACGAGAACCCATGGATTGTGAGTGCCAGTGATGATCAAACCATTCGCATATGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAACCACTATGTTATGTGTGCTTCATTCCATCCCAAGGAGGATATTGTTGTGTCAGCCTCCCTGGATCAGACTGTTCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCTGGGCCTCCTTCCGATGATATTTTGCGATTGAGTCAGATGAATACAGATCTTTTTGGTGGCGTCGATGCCGTTGTCAAGTACGTTTTGGAAGGTCATGACCGGGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTTATTGTCTCAGGAGCTGATGATCGTCAAGTGAAACTTTGGAGGATGAATGACACTAAGGCATGGGAAGTGGATACTTTGAGAGGTCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCCAATTCTGAGGATAAAAGTATTCGAGTATGGGATGCAACAAAGAGGACTGGAATTCAAACCTTCCGCAGGGAACATGATCGATTTTGGATTCTCTCAACGCATCCTGAAATGAATCTGTTGGCAGCTGGCCATGACAGTGGCATGATAGTTTTCAAGCTGGAGAGAGAAAGGCCCGCCTTTGCTGTTAGTGGTGATTCCTTGTTCTACACAAAAGACCGCTTTTTGCGGTTCTATGAATTTTCAACACAGAGAGAGACACAAGTGCTTACTATTCGGAGACCTGGTTCTTTAAGCCTGAATCAAAGTCCTAAGACTCTTTCCTACAGTCCTACTGAAAATGCAATTCTTCTCTGTTCTGATGTGGATGGTGGATCTTATGAGTTGTACTGCATATCCAAAGATAGCACAATTAAGGACAGTTTTGGTAGGGGTGATATGCAAGAACCAAAGAAAGGTCTTGGAGGATCAGCAGTCTTCGTGGGTAGGAATAAGTTTGCCGTGCTTGAAAAAAGCAGCAACCAAGTCCTTTTAAAAAACCTGAAGAATGAGCTTGGAAAGAAGATTGTGCTCCCGATTGCCACTGATGCTATATTCTATGCTGGGCCTGGCAGCTTGCTTTGTAGGTCTGAGGATAGGGTGTTTATATTTGATTTTCAGCGGAGGACCGTTGATGGCGATCTTCAGACCCCTTTCATCAAGTATGTTGTCTGGTCTAATAACATGGAAAGTGTCGCTTTACTCAGCAAACATGCAATTGTCATTGCTAGCAAGAATCTGGTGCATCAATGCACCCTCCATGAGACAATCCGTGTAAAGAGTGGAGCCTGGGATGACAATGGCATTTTTATTTACACAACATTAAATCATATCAAATACTGCCTCCCAAATGGAGACAGTGGGATAATAAAAACACTGGACGTCCCAATTTATATCACAAAGGTTGTTGGAAATACCATCTTCTGCTTGGGTCGGGATGGGAAAAACAAAGCTATAACCGTTGATGCTACAGAGTATATCTTTAAGCTTTCCTTGTTGAAGAAAAGATATGACCATGTTATGAACATGATAAAGAATTCACAACTTTGTGGGCAAGCTATGATTGCTTATCTACAACAGAAAGGATTTCCTGAGGTTGCCCTCCATTTTGTGAAAGATGAGAGAATTCGGTTCAATTTGGCTTTAGAGAGTGGAAACATTCAAATTGCAGTTGCATCAGCTACAGCAATTGATGAGAAAGATCACTGGTACCGATTGGGAGTTGAAGCTCTTCGACAAGGCAATGCTGGTATAGTAGAGTATGCATATCAGAGGACCAAGAATTTTGAGAGATTATCTTTCCTTTATCTCATCACTGGTAATGTGGAGAAACTTTCAAAGATGTTGAAAATTGCTGAAGTCAAGAATGATGTCATGGGCCAGTTTCACAATGCCTTATATATGGGTGATATTCGAGAGCGTGTTAAGATCTTGGAGAATGTGGGCCATTTGCCTCTTGCTTATATAACTGCATCATCCCATGGGCTGCACGACGTTGCTGAAAGGCTTGCAGCTGAATTGGGGGATAATGTTCCATCTTTGCCCGAGGGGAAAGTGCCATCTCTCTTGATACCTCCATCACCTGTACTGTGCTGTGGTGATTGGCCCCTTCTTAGGGTCATGCGAGGCATATTTGATGGTGGGTTTAGCAACGCCGATCAAGATGCTGACGATGAGGAGCTTGTGGATGCTGCAGGTGATTGGGAGGGGCTCGACGACATGGTTGATGGACTTCAAAATGGAGATGTTGCTGACATTTTGGAAGATGGAGAGTTGGCCGAAGATGGCGATGAAGAGGGTGGATGGGAGCTGGAAGATTTAGAACTCCCCCCTGAAGCTGACACTCCAAAAGCTTCTGTCAGTACGCGGTCTTCAGTTTTTGTGGCCCCAACACCTGGGATGGCAGTTAGCCAGATATGGACTCAGAGGTCATCTCTTGCTGCTGATCATGCAGCTGCTGGCAATTTTGATACTGCTATGAGATTACTCAACAGGCAGCTTGGAATAAAAAACTTTGCCCCCTTGAGATCCATGTTCCTGGATCTTCATTCGGCCAGTCACTCTTATCTGCGCGCCTTTTCATCTGCTCCAGTTGTACCCCTTGCTGTTGAAAGGGGTTGGACTGAGTCGTCTAGTCCAAATGTGAGAGGCCCACCGGCACTTCCTTTTAAATTGTCTCAATTAGATGAAAAGCTCAAAGCTGGTTATAAGTCAACAACTGCTGGGAAATTCACCGATGCTCTTCGTACATTTGTCAATATTCTCCATACAATTCCTCTGATTGTTGTCGAGTCAAGGAGGGAAGTAGATGATGTAAAGGAATTGATAATCATAGTCAAAGAGTATGTTCTGGCTCTGCAGATGGAACTGAAAAGAAGGGAAATAAAGGACAATCCAGCCCGCCAGCAGGAACTGGCAGCATATTTCACCCACTGCAATCTTCAGACACCTCACTTGAGGCTAGCTTTGTTGAATGCAATGACTGTCTGCTACAAAGCAAAGAACCTTGCCACAGCTGCTAACTTTGCCAGGAGACTACTTGAGACCAATCCTAGCATTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTTGCAGCTGCAGAAAGGAATATGACTGATGCCACAGAGTTGAACTATGATTTCCGAAACCCATTTGTAATTTGTGGGGCAACCTATGTGCCCATTTATCGTGGACAGAAGGATGTCTCTTGCCCATACTGTACTTCCCGTTTTGTACCAACCCAGGAGGGCCAGCTATGCACTGTGTGTGAACTTTCAGTGGTGGGTGCAGATGCTTCTGGATTGCTCTGTTCTCCTTCACAGATTCGTTGA 3546 0.4411 MGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPSDDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILSTHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRETQVLTIRRPGSLSLNQSPKTLSYSPTENAILLCSDVDGGSYELYCISKDSTIKDSFGRGDMQEPKKGLGGSAVFVGRNKFAVLEKSSNQVLLKNLKNELGKKIVLPIATDAIFYAGPGSLLCRSEDRVFIFDFQRRTVDGDLQTPFIKYVVWSNNMESVALLSKHAIVIASKNLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTIFCLGRDGKNKAITVDATEYIFKLSLLKKRYDHVMNMIKNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLPLAYITASSHGLHDVAERLAAELGDNVPSLPEGKVPSLLIPPSPVLCCGDWPLLRVMRGIFDGGFSNADQDADDEELVDAAGDWEGLDDMVDGLQNGDVADILEDGELAEDGDEEGGWELEDLELPPEADTPKASVSTRSSVFVAPTPGMAVSQIWTQRSSLAADHAAAGNFDTAMRLLNRQLGIKNFAPLRSMFLDLHSASHSYLRAFSSAPVVPLAVERGWTESSSPNVRGPPALPFKLSQLDEKLKAGYKSTTAGKFTDALRTFVNILHTIPLIVVESRREVDDVKELIIIVKEYVLALQMELKRREIKDNPARQQELAAYFTHCNLQTPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPSIENQAKTARQVLAAAERNMTDATELNYDFRNPFVICGATYVPIYRGQKDVSCPYCTSRFVPTQEGQLCTVCELSVVGADASGLLCSPSQIR 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02737 1181 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Trre7g02737 1181 PANTHER COATOMER 1 292 - -
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 237 - -
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 82 - -
Trre7g02737 1181 PRINTS G protein beta WD-40 repeat signature 111 125 IPR020472 -
Trre7g02737 1181 PRINTS G protein beta WD-40 repeat signature 69 83 IPR020472 -
Trre7g02737 1181 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Trre7g02737 1181 SMART WD40_4 240 278 IPR001680 GO:0005515
Trre7g02737 1181 SMART WD40_4 154 193 IPR001680 GO:0005515
Trre7g02737 1181 SMART WD40_4 85 124 IPR001680 GO:0005515
Trre7g02737 1181 SMART WD40_4 43 82 IPR001680 GO:0005515
Trre7g02737 1181 SMART WD40_4 198 237 IPR001680 GO:0005515
Trre7g02737 1181 SMART WD40_4 1 40 IPR001680 GO:0005515
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 125 - -
Trre7g02737 1181 Gene3D - 605 777 - -
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 202 IPR001680 GO:0005515
Trre7g02737 1181 Coils Coil 1088 1115 - -
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
Trre7g02737 1181 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 198 552 IPR011048 -
Trre7g02737 1181 CDD Coatomer_WDAD_alpha 284 741 IPR047312 -
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 125 IPR001680 GO:0005515
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats profile. 8 49 IPR001680 GO:0005515
Trre7g02737 1181 SUPERFAMILY WD40 repeat-like 2 276 IPR036322 GO:0005515
Trre7g02737 1181 FunFam Coatomer subunit alpha 1 280 - -
Trre7g02737 1181 PIRSF Alpha-COP 1 1177 IPR016391 GO:0006886|GO:0006888|GO:0030126
Trre7g02737 1181 Gene3D - 1 280 IPR015943 GO:0005515
Trre7g02737 1181 Pfam Coatomer (COPI) alpha subunit C-terminus 780 1181 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 8 40 - -
Trre7g02737 1181 CDD WD40 2 278 - -
Trre7g02737 1181 FunFam Coatomer subunit alpha 605 777 - -
Trre7g02737 1181 Pfam Coatomer WD associated region 303 733 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Trre7g02737 1181 Pfam WD domain, G-beta repeat 6 40 IPR001680 GO:0005515
Trre7g02737 1181 Pfam WD domain, G-beta repeat 159 192 IPR001680 GO:0005515
Trre7g02737 1181 Pfam WD domain, G-beta repeat 202 237 IPR001680 GO:0005515
Trre7g02737 1181 Pfam WD domain, G-beta repeat 87 124 IPR001680 GO:0005515
Trre7g02737 1181 Pfam WD domain, G-beta repeat 45 82 IPR001680 GO:0005515
Trre7g02737 1181 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 161 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02737 Trre-Chr7 23688277 23693332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02737 23 280 Miscellaneous Gene Families AT5G08390 25.194 2.06e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02737 K05236 - gmx:100802600 2177.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02737 7 23688277 23693332 Trre7g02737 7 23688277 23693332 ECH