Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02666 ATGGAACTTAACAAATTCTGTTTCAACCACCACCACCACCACCACAACCGTTCTCTCCGATTAACCTCTCCTCTTTCTCTTTCCCCTCCTCGCACTCACTTCCTCGGTTGCAATCACACTCTTCTTAACCAACCACCTGCTACTTCAGCTTCAACTTCATCAATTCGGTTTCGTAATAAACGTAACAATAAGTTAGGGCTTCTTCGTCTTCATTCTCCTCGGTTTGTTTTCAAGGCTTCTTTAGCCTCTCACTCGCTTATTGTCGTTGTTGTCGTTGTTACTTTATCTGCTGTTTCTTTTCTTCATTTCACTCTCAATAACAAAAAGAAGAAGAATCTCAATCAGGGACATGCAAAATTTGCATTATCACCAGGAAGTAATGCTGGGAACCAGGTTATTGATAGACAGATTCTTGGTTTTCCAGAATTTCAAAGGGACAACTCACTGACCGAAATTGGAAAGTTAAATGGTCACATCGTAAAGGACAAACATGTTTTTGAGGAGCAAGAGGTCCCCCTTCAGTTTTTACAATCTTCTATGGTGCAGGAAACAGCCTTGAAGACTCAGATATTAGATTCATCTTCGTCTGTTCATGACTCTGGTGTCAATGGTAACAGTTCTGAGGTATTAGAGGAGCCTTTTTTATCTTTGGCTTTCCAATCAAGTTCATTGGAACCTATATCTTTTGCTGAGGAAATGACTTTACAAGTGGAAGAAAATCAAGACGTTGCTGACTCTGATCTTGAGTTGCCTTTGAGTATAGTCAAACCTGACCAAAATGTTTCTTCTGTTGGTTTAGACAATGCGCTTGATACAATCTATGAACATACTAAAGAAAAAATTGACCTTCGAGCCATCAAAAGTGATGTCCTTTTTGGTGAATCTGTTAGGGATGGGCTTTACCAGTTCTATGAGGACAATAATTCTGCATCCAGATCCATGACACCCTTGAGTAGTATCATGTCATTTTCTCCCCGTGCTTCTTCTGTGAATAGTACAGGACTCTCATCAGCTATAAGAAATATCAGCCTAAATGGATTAGGATTATCTGCCGACATTTCTCTTCAAAATGCAGAGTATGTTGAAGAAGCAGTTGAAATTTCCAGTCACAAAGAAGGCTACCCTCCACAACATTTAAGTAAAAACTTGAGGAAAGCCAGCAGATATCCAAGAGACAGGGAAAACTATATGGATCCTAATAGTAACAATGTTTTGCCCCAGAGTTCCCACATCAGGGTGCATGTCGATCAGCGAAATGACCAAATCAGGGTCCACGATGGTCAGGAAATTGGTCCTTCAGAGCATCGAAGAAAATATAATAACTTGCTAAAATTTGGAAGGTTACATGAATGTGTAGAATTGCTTGAAGATATGAAAATGAAGGGTTTATTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAAAAAAAAGCTGTTAAAGAAGCTTTTGATTATGTTAGGCTTATTCCAAATCCAACGCTGAGTACATTTAATATGCTAATGTCAGTGTGTGCATGTTCCGAAGATTCAGAAGGGGCTTTCCAAGTTATGCAGCTTCTTAAGGATGCTCGACTTGATCCTGATTGCAAACTTTATACCACTCTGATATCAACTTGTGGCAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACACGATGGTTAATCTTGGAGTGGAACCTAACGTTCATACCTACGGGGCACTTATTGATGGTTGTGCTAGAGCTGGTCAAGTAGCTAAAGCATTTGGTGCTTATGGGATCATGAGGTCAAAGAATGTGAAGGCAGATCGTGTTGTTTTCAATGCACTTATAGCTGCATGTGCACAGTCAGGAGCAATGGCTCGTGCCTTTGATGTGATAGGAGAAATGGAAGCTGAAATACATCCTATTGAGCCAGATCACGTAACTGTTGGTACATTGATGAAAGCATGTGCAAAGGCTGGTCAGGTTGAACGAGCACGTGAAGTGTATAAGATGATACAACAATATAATATAAAAGGATCTTCAGAAGTTTACACAATTGCAATTAATTCTTGTAGTCAAACCGGAGATTGGGAATTTGCACGTAGTGTATACGACGACATGACCCAGAAAGGGGTGCTTCCTGATGAGATGTTTCTGAGTGCACTAATAGATGTTGCTGGGCATGCTAAAAAGCTGGAGGCTGCCTTTGATATACTACAAGAAGCCCGGAAAGAAGGAATACGGATTGGAATAATGACATATAGCTCATTGATGGGCGCCTGTAGCAAGGCAAAAAATTGGCAGAAAGCATTGGAGCTATACGAATATCTTAAATCTCTTAAATTGGTGCGGACCGTTTCAACTGTTAATGCTTTGCTCACTGCACTTTGTGATGGGGATCAATTTCAGAAGGCTTTCGAGGTTTTATCTGAAATGAAAGGATTAGGATTGCGCCCAAACAGTATCACATTCTCAATACTTATTGTGGCAAGTGAGAAGAAGGATGATATGGAAGCAGCTCAAATGCTCCTTTCTAAAGCCAAAAAGGATGGTGCATCCCCTACTCTCATCATGTGTCGATGCATAGTTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCCTTGCTGGTGAATCTGTTTTATCTTTTGACTCAGGACAGCCACAAGTTAATAGTGAATGGACATCACTGGCTTTAATGGTGTATCGTGAAACAATCGGAGCTGGTGAAAAGCCTACAAGTGAAATATTGTCACAAATTCTGGGATGCTTGAAATTCCCTTATGACACATATGTGAAAACTAGACTTGTTGAGAGCCTGGGAGTAAGTGTTGAAAGCTCAGGAAAGGCAAACCTCTGTTCATTGATAGAAGGATTTGGCGAATATGATCCTCGTGTTTTTTCAATACTTGAGGAAGCTGCTTCATATGGAGTTGTTCCATCAGTATCATTTAAAATGAATCCCATTGTTATTGATACTAAAGAATTGGATGCTCTTACTGCTGAGGTATACATCTTAACTATTTTGAAGGGTCTCAAGCATCGACTAGCAGCAGGTGCAAAACTACCCAATATAATCATTTTATTGCCTGTAGAAGAAGCAAAAGTTTCATCTCCTGAAGGGGAAAAGAGTATTATACTTGCAGAAAGAGGTGGCCAAGCAGTTGCATCGTTGTTCAGGAGGCTTCATATTCCTTTCCAGGGTAATGAATCAAATGGGAAACTTAGATTAAATAATCTGGGCCTGGTAAAATGGTTTCAGCCAAAGCTTGCATCTCCATTCATCAGTTTACAAGGTGACTGGAGCTCATCCCAATCGCGTCTTGGCAAAAATATTAGCAATCAGCAGCGAAACATTCGAACTGGCAATCTATCTTTGGACTAA 3369 0.4022 MELNKFCFNHHHHHHNRSLRLTSPLSLSPPRTHFLGCNHTLLNQPPATSASTSSIRFRNKRNNKLGLLRLHSPRFVFKASLASHSLIVVVVVVTLSAVSFLHFTLNNKKKKNLNQGHAKFALSPGSNAGNQVIDRQILGFPEFQRDNSLTEIGKLNGHIVKDKHVFEEQEVPLQFLQSSMVQETALKTQILDSSSSVHDSGVNGNSSEVLEEPFLSLAFQSSSLEPISFAEEMTLQVEENQDVADSDLELPLSIVKPDQNVSSVGLDNALDTIYEHTKEKIDLRAIKSDVLFGESVRDGLYQFYEDNNSASRSMTPLSSIMSFSPRASSVNSTGLSSAIRNISLNGLGLSADISLQNAEYVEEAVEISSHKEGYPPQHLSKNLRKASRYPRDRENYMDPNSNNVLPQSSHIRVHVDQRNDQIRVHDGQEIGPSEHRRKYNNLLKFGRLHECVELLEDMKMKGLLDMTKVYHAKFFNICKKKKAVKEAFDYVRLIPNPTLSTFNMLMSVCACSEDSEGAFQVMQLLKDARLDPDCKLYTTLISTCGKSGKVDLMFEVFHTMVNLGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDVIGEMEAEIHPIEPDHVTVGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCSQTGDWEFARSVYDDMTQKGVLPDEMFLSALIDVAGHAKKLEAAFDILQEARKEGIRIGIMTYSSLMGACSKAKNWQKALELYEYLKSLKLVRTVSTVNALLTALCDGDQFQKAFEVLSEMKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSKAKKDGASPTLIMCRCIVGMCLRRFEKACLAGESVLSFDSGQPQVNSEWTSLALMVYRETIGAGEKPTSEILSQILGCLKFPYDTYVKTRLVESLGVSVESSGKANLCSLIEGFGEYDPRVFSILEEAASYGVVPSVSFKMNPIVIDTKELDALTAEVYILTILKGLKHRLAAGAKLPNIIILLPVEEAKVSSPEGEKSIILAERGGQAVASLFRRLHIPFQGNESNGKLRLNNLGLVKWFQPKLASPFISLQGDWSSSQSRLGKNISNQQRNIRTGNLSLD 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02666 1122 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Trre7g02666 1122 Coils Coil 825 845 - -
Trre7g02666 1122 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Trre7g02666 1122 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Trre7g02666 1122 Pfam Pentacotripeptide-repeat region of PRORP 648 790 IPR033443 -
Trre7g02666 1122 Pfam Pentacotripeptide-repeat region of PRORP 500 643 IPR033443 -
Trre7g02666 1122 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Trre7g02666 1122 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 725 872 - -
Trre7g02666 1122 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 633 724 - -
Trre7g02666 1122 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 447 578 - -
Trre7g02666 1122 Pfam PPR repeat 442 463 IPR002885 -
Trre7g02666 1122 Gene3D Tetratricopeptide repeat domain 578 744 IPR011990 GO:0005515
Trre7g02666 1122 NCBIfam pentatricopeptide repeat 678 711 IPR002885 -
Trre7g02666 1122 NCBIfam pentatricopeptide repeat 570 603 IPR002885 -
Trre7g02666 1122 NCBIfam pentatricopeptide repeat 783 815 IPR002885 -
Trre7g02666 1122 NCBIfam pentatricopeptide repeat 748 779 IPR002885 -
Trre7g02666 1122 NCBIfam pentatricopeptide repeat 536 569 IPR002885 -
Trre7g02666 1122 NCBIfam pentatricopeptide repeat 642 673 IPR002885 -
Trre7g02666 1122 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 633 IPR002885 -
Trre7g02666 1122 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 22 1121 - -
Trre7g02666 1122 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 779 IPR002885 -
Trre7g02666 1122 Pfam Pentatricopeptide repeat domain 803 861 IPR002885 -
Trre7g02666 1122 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Trre7g02666 1122 Gene3D Tetratricopeptide repeat domain 463 577 IPR011990 GO:0005515
Trre7g02666 1122 Gene3D Tetratricopeptide repeat domain 755 872 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02666 Trre-Chr7 22395994 22406627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02666 537 862 Glycosyltransferase AT1G05670 23.853 3.95e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02666 - - gmx:100814164 1527.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02666 7 22395994 22406627 Trre7g02666 7 22395994 22406627 ECH