Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02637 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCTTCATCCAGTCCTAAAACTCGTTCAAACAAGCGCGCTCGTGTATCTTCTTCTTCTTCTAATTCTTCATCTTCTGCTACCGTAGCCACAGCCACAGCGACAGCCACCAACACAGCGACAACAACAACATCCACTCCTGTTCGTTCAGCCAACACTCGTTCCCGCGCATCTAGAACCAAGGAAACTTTACCGCCTAAGAATCCGACTCCTATGGACTCCAACAATGAATCAGGCTCTGGCTCTAGACGTGATCGACGTGGTAAGAATTTGGAAAGGGATAATTCTGATAAGGGAAAGGAGAAAGAGCACGATGTTAGGATCAGGGAAAGAGAGGCCGAGAGAGGCTTGGCGTTGAACGTGGAAACTGGTGCTGGGGATGAAGATGATAACGATAGTGACAGTGGTATTTTGCGTCAGAATTTAACATCTGCGAGCAGTGCACTCCAAGGTCTTCTTCGTAAACTCGGTGCTGGTTTGGATGATCTGCTTCCCTCATCCGGGATGGGTTCGTCATCTCATCAGAGTGGGAGGTTGAAGAAGATCCTGTTTGGGCTACGAGCTGATGGAGAAGAAGGACGACAGGTTGAGGCTTTGACGCAGCTTTGTGAAATGCTTTCTATTGGGACTGAGGATTCCCTTAGTACTTTCTCCGTTGATTCGTTTGTACCGGTGCTCGTGGGGTTGCTGAATCACGAGAGTAATCCTGATATTATGCTTCTTGCTGCTAGGGCGCTAACCCATCTCTGTGATGTGCTCCCTTCGTCTTGTGCTGCTGTTGTGCATTATGGAGCTGTTTCAATCTTCTGCGCGAGGTTGCTCACTATAGAGTATATGGACTTGGCTGAACAGTCCCTTCAAGCTCTAAAAAAGATATCTCAGGAGCACCCAACTGCATGCCTACGAGCTGGGGCTCTCATGGCCGTACTCTCTTATCTGGACTTCTTCTCAACTGGAGTTCAGCGTGTTGCACTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCGTCAGATGCATCTGACTTTGTGATGGAAGCTGTTCCCCTTCTGACAAACCTCCTTCAGTACCACGATTCTAAGGTCCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCATTCGCATCATCTTCGGACAAATTAGATGAATTATGCAATCATGGACTAGTAACACAAGCTGCCTCCCTCATTTCTAACAGCAGTTCTGGAGGTGGACAGGCTTCTCTCAGTACGCCAACATATACCGGTTTAATTCGACTTCTTTCAACATGTGCAAGCGGGTCCCCTCTTGGAGCTAAAACTCTGCTTCTGCTTGGAATTAGTGGTATTCTTAAAGATATTCTCTCTGGTTCTGGAGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAACAGGCCGCCAGAGCAGATATTTGAGATAGTAAACCTGGCAAATGAGCTTCTCCCCCCATTACCACAAGGGACTATTTCCCTCCCTGTCAATACCAACTTTGTGAAGGGTCCGGTTATAAGAAAGTCTACTGCTGGCAGTTCTGTGCAACAAGAAGACACAAATGGAGATGTTCCTGAGATATCCGCTCGTGAGAAGCTATTAAATGAACAGTCTGAGCTGCTTAGGCAATTTGGGATGGATCTCCTCCCAGTTTTAATTCAGATTTATGGTTCTAGTGTCAATATACCTGTTCGGCACAAATGTCTGTCGGTCATTGGAAAGTTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTAAGCGTGACAAATATATCAAGTTTCTTAGCTGGAGTCTTGACATCGAAAGATCCACATGTATTGCTACCTGCCTTGCAAATTGCCGAAATTCTTATGGAAAAGCTGCCCGAGACATTCTCTAAGATGTTTATCAGAGAAGGTGTTGTCCATGCAGTGGACCAACTTATTTTGCCCGGAAATTCTACCATTGTCACTTCAGCAGAGAAGGATACTGATTCTATACCTGGAGCATCATCTCGCCCTAGGCGTAATCGGCGACGCTCTGGCAACTCCAATCCTGATGGAAATTCTTTGGAAGAAATCAAGAGTCCTGTTTCGGTAAATGTTGGTTCACCTCCAAGTTCTTCAAATATTCCAACAGCAAATTCTAGTATCCGGTTATCTGTTAGCGCAGCTGCAAAAACTTTTAAAGATCAGTACTTTCCTTCAGATCCTGGGGCTGTTGTGGGTGTTACTGAAGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGTTGATGACCAAAGAACTAATGGTAAGGGGAAATCTAAAACTTCTGGATTTGGTATGGAGGAGTGTCTAATTGGCATCATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCCACTTTTGAATTTATTGGTAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGCGGGTATTTTGCTAAAGATAAACCCTCAGAAACCCACCTACCTAAGCTTCGCAAACAAGCACTTTCAAGGTTTAAGTCATTTATTACTGTTGCACTGCCTGCCACTATTGACAATAAGGATGTAACTCCTATGACTGTCTTGGTTCAAAAGCTTCAAAATGCTTTGTCCTCCATGGAGCGTTTCCCTGTCTTGCTGAGTCAATCACCTAGGTCATCCAGTGGAAGTGCACGCCTCTCTTCTGGACTAAGTGCATTATCCCAGCCCTTCAAATTGCGCCTTTGTCGAGCCCAGGGGGAAAAGTCACTTAAGGATTATTCAAACAATGTTGTATTGATTGATCCATTAGCTAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAGCGAAGTGAATCTGTTCAGAAGTCCACTGCACCTGCTGGGAATTCCGAATCTGGGACCAGTCCTGCAGGAGCTGGTGTTCCACCTCCTTCTACCTCTACCCCATCCACTACCCGTCGTCATTCTACGAGATCCAGACCATCTGCTAGTTCAGGGGATACCCCCAAAAAAGAGTTACCTCAAGATAAAACCTTGAGCTCATCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGGAAGAGGACCTCAAACCAGGAATGCTGCACGCAGAAGAGCAGCTCTTGATAAAGATGTTCAAATGAAGCCTGCAAATGGGGACTCTACTTCTGAGGATGAAGATTTAGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTAATCGAAGATGATGATGATATTTCTGATGATGAAGATGATGACCATGAAGACATGCTGAGGGATGACTCCCTTCCTGTTTGCGTACCTGACAAAGTACATGATGTTAAATTGGGTGACTCAGCTGAGGAGAGTACTGTTACTCCTGCAACTAATGAAGGCCAGACTAATGCAGCTTCTGGTTCTAGTAGCAAAGTTGGTTCGGTAAGGGGATCAGACACTGCAGATTTTAGGGGGGGCTATTCTTCTAGCTCTCGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGAATCAGGGGTGGCAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAGTGATTCTCCTCCGAAGTTAATATTCACTGCTGGTGGGAAACAACTGAACAGGCAGCTGACTATTTATCAAGCAGTTCAAAGACAGCTTGTACTAGATGAAGATGACGATGAGAGATTTGCTGGCAGTGAATTTGTGTCAAACGATGGAAGCAGGATGTGGGGTGACATTTTCATAATAAATTATCAGAAGGCAGATAGCCAAATAGATAAGGCTTCCCCAGTAGGCCCAAGTTCTAACACTTCAAAATCTAGTAAATCTGGGTCTGTATCAAATTGCAGTTCTGAAGTTAAACTGCATCAGACATCTGTAGTAGATAGTATCTTACATGGAGAATTGCCTTGTGAGCTAGAGAAATCTAATCCCACATACGACATATTGGCTCTGTTACGTGTGCTGGAGGGTTTGAACCATCTCGCACCTCGTTTGAGAGCTCAAGTGGCTACTGATAGTTTTGCAGAGGGAAAATTTTTGGATCTAGATGAGCTAGTTGTTGCCACAGGTTCCAAGGTTCCTCCAGAGGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAGATACAAGATGCCCTTGCCCTATGCAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTAACTAAAGCGTGCCCTTTTTTGTTTCCATTTGAGATCCGAAGACAATACTTCTATTCAACTGCCTTCGGGTTATCTCGTGCATTGTATCGGCTCCAACAGCAGCAGGGTGCCGATGGTCATGGATCAACAAATGAGAGAGAGGTTAGGGTTGGAAGGCTGCAGCGACAAAAGGTTCGTGTCTCTCGAAACCGCATTTTGGATTCCGCGGCTAAAGTGATGGAAATGTATTCCAGCCAAAAGGCTGTGCTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCGACCCTTGAGTTCTATACACTTCTAAGTCACGACTTGCAAAAAGTTGGACTTCAGATGTGGAGGTCAGGTTCTGATCAAATGGAAATTGATGGAGATGATAAGAAAAAGAAAAGCAGTGAAGGCAATATTGCTAGAGATGGGGAACTTGTTCAAGCTCCTCTTGGTTTGTTTCCTCGTCCCTGGCCTGCAAATGCCGATGCCTCTGAGGGTAGCCAGCTTTTTAAAGTGATTGAATATTTCCGGCTTTTAGGCCGCGTAGTTGCTAAAGCACTTCAAGATGGACGCCTATTAGATTTGCCATTATCCGTAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGCATGACATTCTTTACATTGATGCTGAACTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTTTGCCGGAAACATAATATAGAATCTATTGGTGGTGGTTATTCTGGTGGAGTAGCCAATTTGCATTACCGTGGAGCTCCAATTGCAGATCTCTGTTTGGATTTTACCCTTCCTGGTTATCCCGATTACACCTTGAAACCTGGGGATGAAATTGTTGACCTCAATAATCTAGAGGATTATATATCCATGGTCGTTGATGCCACTGTCAAGACTGGAATAATGCGCCAACTAGAAGCCTTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAATATTTACGCCTCACGAATTGGATAATTTGCTTTGCGGCCGTAAAGAATTGTGGAAGACAGAGACACTAGCTGATCATATAAAATTTGACCATGGGTATACTGCCAAAAGCCCAGCAATAGTGAATTTACTTGAAATTATGGGAGAGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCAAAGCTACCACCTGGTGGACTGGCTGTTCTAAATCCAAAATTAACGATTGTGAGAAAGCTCTCGTCAACTGCCGCTCACACTACATCCAATGGGAACGGACCTTCAGAAACAGCAGATGATGACTTGCCAAGTGTGATGACATGTGCAAATTACCTGAAGCTTCCTCCCTATTCTACCAAGGAAATTATGTACAAGAAGCTAATGTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5682 0.4463 METRSRKRAEASSAAPSSSSSSPKTRSNKRARVSSSSSNSSSSATVATATATATNTATTTTSTPVRSANTRSRASRTKETLPPKNPTPMDSNNESGSGSRRDRRGKNLERDNSDKGKEKEHDVRIREREAERGLALNVETGAGDEDDNDSDSGILRQNLTSASSALQGLLRKLGAGLDDLLPSSGMGSSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALNRPPEQIFEIVNLANELLPPLPQGTISLPVNTNFVKGPVIRKSTAGSSVQQEDTNGDVPEISAREKLLNEQSELLRQFGMDLLPVLIQIYGSSVNIPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLTSKDPHVLLPALQIAEILMEKLPETFSKMFIREGVVHAVDQLILPGNSTIVTSAEKDTDSIPGASSRPRRNRRRSGNSNPDGNSLEEIKSPVSVNVGSPPSSSNIPTANSSIRLSVSAAAKTFKDQYFPSDPGAVVGVTEDLLHLKNLCMKLNAGVDDQRTNGKGKSKTSGFGMEECLIGIISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFAKDKPSETHLPKLRKQALSRFKSFITVALPATIDNKDVTPMTVLVQKLQNALSSMERFPVLLSQSPRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLKDYSNNVVLIDPLASLAAIEEFLWPRIQRSESVQKSTAPAGNSESGTSPAGAGVPPPSTSTPSTTRRHSTRSRPSASSGDTPKKELPQDKTLSSSKGKGKAVLKPAQEEGRGPQTRNAARRRAALDKDVQMKPANGDSTSEDEDLDISPVEIDEALVIEDDDDISDDEDDDHEDMLRDDSLPVCVPDKVHDVKLGDSAEESTVTPATNEGQTNAASGSSSKVGSVRGSDTADFRGGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSSDSPPKLIFTAGGKQLNRQLTIYQAVQRQLVLDEDDDERFAGSEFVSNDGSRMWGDIFIINYQKADSQIDKASPVGPSSNTSKSSKSGSVSNCSSEVKLHQTSVVDSILHGELPCELEKSNPTYDILALLRVLEGLNHLAPRLRAQVATDSFAEGKFLDLDELVVATGSKVPPEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEIRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSDQMEIDGDDKKKKSSEGNIARDGELVQAPLGLFPRPWPANADASEGSQLFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILYIDAELGKTLQELNALVCRKHNIESIGGGYSGGVANLHYRGAPIADLCLDFTLPGYPDYTLKPGDEIVDLNNLEDYISMVVDATVKTGIMRQLEAFRAGFNQVFDISSLQIFTPHELDNLLCGRKELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAAHTTSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMYKKLMYAINEGQGSFDLS 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02637 1893 SMART arm_5 310 350 IPR000225 GO:0005515
Trre7g02637 1893 SMART arm_5 353 391 IPR000225 GO:0005515
Trre7g02637 1893 SMART arm_5 227 268 IPR000225 GO:0005515
Trre7g02637 1893 Gene3D - 545 673 IPR011989 -
Trre7g02637 1893 SMART hect_3 1486 1893 IPR000569 GO:0004842
Trre7g02637 1893 MobiDBLite consensus disorder prediction 671 725 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 10 95 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 694 725 - -
Trre7g02637 1893 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1762 1892 - -
Trre7g02637 1893 Gene3D - 186 503 IPR011989 -
Trre7g02637 1893 SUPERFAMILY Hect, E3 ligase catalytic domain 1467 1886 IPR035983 GO:0004842
Trre7g02637 1893 MobiDBLite consensus disorder prediction 1134 1160 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 1110 1131 - -
Trre7g02637 1893 SUPERFAMILY ARM repeat 196 666 IPR016024 -
Trre7g02637 1893 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1893 IPR045322 GO:0006511|GO:0061630
Trre7g02637 1893 MobiDBLite consensus disorder prediction 1 155 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 96 134 - -
Trre7g02637 1893 ProSiteProfiles HECT domain profile. 1593 1893 IPR000569 GO:0004842
Trre7g02637 1893 MobiDBLite consensus disorder prediction 1048 1062 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 1074 1109 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 965 1016 - -
Trre7g02637 1893 FunFam HECT ubiquitin protein ligase family protein KAK 189 503 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 1281 1304 - -
Trre7g02637 1893 Gene3D Hect, E3 ligase catalytic domains 1416 1655 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 965 1162 - -
Trre7g02637 1893 FunFam E3 ubiquitin-protein ligase UPL3 1416 1654 - -
Trre7g02637 1893 MobiDBLite consensus disorder prediction 1192 1217 - -
Trre7g02637 1893 Gene3D Hect, E3 ligase catalytic domain 1764 1891 - -
Trre7g02637 1893 Pfam HECT-domain (ubiquitin-transferase) 1523 1893 IPR000569 GO:0004842
Trre7g02637 1893 CDD HECTc 1475 1888 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02637 Trre-Chr7 21904974 21914511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02637 K10590 - gmx:100783336 2914.41