Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02633 ATGGGTTTCTTCAGTACCATTTTGGGGTTTTTCGGTTTTGGAGTTGGAATTTCCATTGGTCTCATTCTTGGTTATTTTCTCTTCATCTACTTTCAACCTACAGATGTTAAGGATCCTAAAATTACGCCACTGGTGGATCAAGATGATGAGACTTTGCAGAAAATGCTTCCTGAGATTCCAAATTGGATTAAAAATCCAGACTTTGATAGGCTTGATTGGCTGAACAAGTTTATAGAACTTATGTGGCCTTATCTTGAAAAGGCAATATGCAAGACAGCGAAAAACATTGCGAAACCCATAATTGAAGAGCAAATTCCAAAATATAAAATTGATTCTTTTGAGTTTCAAACACTCACTCTGGGGTCCCTACCCCCAACTTTTCAAGGCATGAAAGTTTATTTGACGGATGAGAAGGAGTTGATTATGGAGCCTTCTATAAAATGGGCCGCAAATCCTAATGTCACCATTGCTGTTAAGGCATATGGGTTGAAAGCAACCGCTCAGGTTGTGGATTTGCAAGCTTTTCTTTTGCCTCGTATCACTTTGAAGCCGTTGGTTCCAAGCTTTCCCTGTTTTGCCAACATCTTTGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGTGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTAGCAAACATGTATCTGTGGCCCAAAACCCTGGAAGTTCCAATATTAGATCTGGCAAAAGCTTTGAGGAGGCCTGTTGGAATTTTACATGTAAAAGTTCTGCATGCCTTGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGATCCTTATGTTAAACTAAAGCTTACTGACGACAAGATGCCATCAAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCTGAGTGGAATGAAGAATTTAATTTGACAGTCAGAGATCCCGAGTCTCAGGTTTTAGAGATCAATGTTTATGACTGGGAGCAAGTTGGGAAGCATGACAAGATGGGTATGAACGTGATCAATTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTGGAACTCTTAAAAACTTTAGATCCCAATGATGCTCAAAATGAGAAATCGCGAGGACAGATTGTTGTGGAATTGACTTATAAACCCTTCAAGGAAGAGGAGATGGGCAAGGGCTTTGACGAGACACAGACAATACCTAAAGCTCCTGAAGGCACTCCACCTGGTGGAGGTCTTCTTGTAGTTATAGTCCATGAAGCTCAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTACGTCTTATTTTCAGAGGGGAAGAGAAAAAGACTAAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTACCAATTTCCAGTAGAGGAGCCTCCCAATGATAGACTACATGTAGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAAAAGGAATCACTGGGTTATGTCGACATCAATCTTGGTGATGTTGTTTCTAACAAGAGAATCAACGAGAAGTATCATCTCATAGACTCCAAGAATGGTCGCATCCAGATAGAGTTGCAGTGGAGAACTTTAGAAGGAGAAGCACAGGGATAA 1629 0.4076 MGFFSTILGFFGFGVGISIGLILGYFLFIYFQPTDVKDPKITPLVDQDDETLQKMLPEIPNWIKNPDFDRLDWLNKFIELMWPYLEKAICKTAKNIAKPIIEEQIPKYKIDSFEFQTLTLGSLPPTFQGMKVYLTDEKELIMEPSIKWAANPNVTIAVKAYGLKATAQVVDLQAFLLPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLVGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVPILDLAKALRRPVGILHVKVLHALKLKKKDLLGASDPYVKLKLTDDKMPSKKTTVKHKNLNPEWNEEFNLTVRDPESQVLEINVYDWEQVGKHDKMGMNVINLKEVSPEEPKRFTLELLKTLDPNDAQNEKSRGQIVVELTYKPFKEEEMGKGFDETQTIPKAPEGTPPGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEEEYQFPVEEPPNDRLHVEVVSTSSRNLLHQKESLGYVDINLGDVVSNKRINEKYHLIDSKNGRIQIELQWRTLEGEAQG 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02633 542 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Trre7g02633 542 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 533 IPR045050 GO:0008289
Trre7g02633 542 Pfam C2 domain 260 360 IPR000008 -
Trre7g02633 542 Pfam C2 domain 419 519 IPR000008 -
Trre7g02633 542 CDD SMP_SYT 60 248 - -
Trre7g02633 542 FunFam Extended synaptotagmin-2 419 535 - -
Trre7g02633 542 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Trre7g02633 542 SMART C2_3c 261 361 IPR000008 -
Trre7g02633 542 SMART C2_3c 419 516 IPR000008 -
Trre7g02633 542 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 393 IPR035892 -
Trre7g02633 542 Gene3D C2 domain 419 536 IPR035892 -
Trre7g02633 542 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Trre7g02633 542 FunFam Synaptotagmin-2 isoform A 255 410 - -
Trre7g02633 542 Gene3D C2 domain 256 408 IPR035892 -
Trre7g02633 542 PRINTS C2 domain signature 326 334 IPR000008 -
Trre7g02633 542 PRINTS C2 domain signature 304 317 IPR000008 -
Trre7g02633 542 PRINTS C2 domain signature 277 289 IPR000008 -
Trre7g02633 542 ProSiteProfiles C2 domain profile. 399 517 IPR000008 -
Trre7g02633 542 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 415 534 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02633 Trre-Chr7 21858373 21864559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02633 247 515 Lipid Metabolism Gene Families AT3G61300 28.322 2.53e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02633 - - gmx:100803978 959.133