Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02563 ATGACAAAGCCTTGTGATTTGCAAATCAACATTAATGATCAGCAGATATTCCTTTTGAAAGAGAAGATTATATCAAAATACTGTGGAAAGGTGAAGAAAATCTTGAATCATCAAAAGAGAAGATGTCAAGTGAAGAAGATGGGAATTATGATCAATGATTTCCCTGGAGGCTCAGATGGGTTTGAGCTAGTTTCAAGGTTTTGTTACAACAATGGAAAAATACCAATTACTGTGGCAAATGTGTCTCTACTCTATTGTTGTGCCATTTATCTTGGAATGACTGAGGAAGTCTTCAACAACAATCTCTTGCAACAAACACAAACTTTTCTTGAGGGAATGCATAATTGGAAATGGAATGACATACTTGAAAGTCTAATGAATTGTAAATTGTTCTATACATATGCAGATTGCTATGGTCTATTGGAGAAGATCGTTAGTGCATTGTTAACAAAGATTGTCCAAAATTCAGATGCAAACCTCATAACTTACACTGCCTCTTTCTCATCGTCGTCACTGTCATCGTCATCAACACCGTCGTCACCTGAAAGCAATTCTGCTAAGAGATTCTCTTCTTCAACACAAACTACACCAGAAATAACCAAGTCAACTCTGCCAAGCAAAGCATGGTGGTTTGAAGATTTGGCAACTTTACCACCAAAGATAATTGAGAAACTTTTTCAGTGTGTTGAAGCATACAAAGCTGAAAACAACAACTTAATCTTTACAAGATTTCTGTTGCAATATCTGAAAACAGCTACTCAAACTAAAGCTGTTGATTGCAGAAACAGCAGTGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGAGTCATACTTGTTGGTAAGAAAACCTTTTCTTGCAGAGGGCTATTTTGGGTATTAAGGATTGTTTCTAGATTTGGGTTAAGTAAAGGTTGCAGAACTGAACTGGAGAAATTGATTGGAGGGATGCTTGAACAAGCTACACTGGATGATCTTTTAGTCTCCGGAAACGATATGGGGATTTACTATGATGTTAACTTGGTGATAAGATTGGTTAGACAATTTGTTGATGCCAATAGCTATGATGGAGTGTCTTTACAGAAAATGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCACCTGATCAGAAACTCAAGATCTCTAAATTTCTTGGAGTTGCAGCATGTTTACCTGACTCTGCAAGGGATTGCTTTGATGGGGTGTATAAAGCCATTGATATCTATCTTGAGTCTCACCCAAATGTTCCATTCGAGGAAAGATCAAGATTGTGTAAATGTCTTAACTATGGTAAACTCAGTTTTGGAGCTAGTAAAGATCTGGCAAAGAACCCCAGAATACCTCCAGGGGTTGCAATGCAGGCACTTATTTCCCAACAAAGAAAAATTCCAACAAGCAACTTTGTAACTGAGAGTCCAAGAAAAAGCCGTTCCCAAATAGTTGTGTACAATGAAGCCACCAAAGACAGCTTCTCCCAAGAGAGAAAGTACATAAAACTAAACCTGGAGGGATTGCAATATAAGGCAGTAGAACTGGAGAAATTAGAAGAAGTGAATGGTCAGATTTCAAATATGTTTAGCAGTAATGTCTTGCTCACTCCTCGTGCTAGAACCTTGCCGAGATATTGTTGA 1644 0.3771 MTKPCDLQININDQQIFLLKEKIISKYCGKVKKILNHQKRRCQVKKMGIMINDFPGGSDGFELVSRFCYNNGKIPITVANVSLLYCCAIYLGMTEEVFNNNLLQQTQTFLEGMHNWKWNDILESLMNCKLFYTYADCYGLLEKIVSALLTKIVQNSDANLITYTASFSSSSLSSSSTPSSPESNSAKRFSSSTQTTPEITKSTLPSKAWWFEDLATLPPKIIEKLFQCVEAYKAENNNLIFTRFLLQYLKTATQTKAVDCRNSSEYAALAETAAYGVILVGKKTFSCRGLFWVLRIVSRFGLSKGCRTELEKLIGGMLEQATLDDLLVSGNDMGIYYDVNLVIRLVRQFVDANSYDGVSLQKMKRVGRLIDKYLREISPDQKLKISKFLGVAACLPDSARDCFDGVYKAIDIYLESHPNVPFEERSRLCKCLNYGKLSFGASKDLAKNPRIPPGVAMQALISQQRKIPTSNFVTESPRKSRSQIVVYNEATKDSFSQERKYIKLNLEGLQYKAVELEKLEEVNGQISNMFSSNVLLTPRARTLPRYC 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02563 547 ProSiteProfiles NPH3 domain profile. 208 466 IPR027356 -
Trre7g02563 547 PANTHER OS12G0117600 PROTEIN 4 518 IPR043454 -
Trre7g02563 547 Pfam NPH3 family 209 441 IPR027356 -
Trre7g02563 547 MobiDBLite consensus disorder prediction 168 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02563 Trre-Chr7 21073851 21076013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02563 6 470 EF-hand Containing Proteins AT3G44820 27.866 2.13e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02563 - - gmx:100808259 809.675