Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02558 ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAACGGGTCTATCTATGTATGCAACTTGCCCTATGGGACCGACGATAATATGTTGGCTGAGTATTTTGGCACCATTGGAGTAATAAAGAAAGATAAACGTACAGGGAGACCTAAAATATGGTTGTACCGAGACAAAGAGACTAACGAACCAAAGGGAGATGCTACTGTAACGTATGAAGATCCACATGCTGCCGCGGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAACATATAATTCAATAGCAGATCCGGGTATTGCTGGTAATGTTGTTGCGCCAGAGGAAACTGAAACTGAAAGTGATGTTAATGGGGTTAATGGAAGAGGTAGAGGTCAAATTGATGCTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGCAGTTGCTCCAATGTGAATTTTGCTTTTCGCGGTGCGTGCAACCGCTGTGGAAGTGCACGTCCTGCTGGTGCTTCTGGTGTTGCAGGAGGAGGTGGCCGTGGCAGGGGTCGTTCTGGGCAAGATTCAGGGGGTATTGGCCGTCCAGCTGGTGCAACTGCAGGACTATTTGGTCCCAATGACTGGCCCTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGATTAAAATGCAATATTTGCAATACCAATAAGCCTGGGCACAATGAGGGTGGTGTAAGAGGAGGGCGGGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGCAGGCTGAAGATGATGGTGAGCTGTATGATGAATTTGGAAACCTTAAGAAGAAATTCCGTGCCAAAACACAGCAATCTGAAGCTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGATGGGAGGTTGAGGATTTAGGGATTGACAGAGATGCTACAGAAAAAAGCAGAGACAGGGGAAGGGACCGTGATGATGGAGATCGCAGAAGCAGGGAGCAAAATGAGGAGAGGCAAAGCGGTCGGAATAGAGAGAGGGACAGAGGAAGAGATCGAGACAGGGATTATGGGCGAGATCGGGACCGAAGTAGACACCGATATTAA 1149 0.4708 MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAAAAVEWFNNKDFHGNTIGVFIAESKNKDDQTYNSIADPGIAGNVVAPEETETESDVNGVNGRGRGQIDASSKPWQQEGDWMCPNTSSCSNVNFAFRGACNRCGSARPAGASGVAGGGGRGRGRSGQDSGGIGRPAGATAGLFGPNDWPCPMCGNINWAKRLKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRRQAEDDGELYDEFGNLKKKFRAKTQQSEAARVLPGSGRAGWEVEDLGIDRDATEKSRDRGRDRDDGDRRSREQNEERQSGRNRERDRGRDRDRDYGRDRDRSRHRY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02558 382 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 128 377 - -
Trre7g02558 382 SMART zf_4 153 180 IPR001876 -
Trre7g02558 382 SMART zf_4 220 244 IPR001876 -
Trre7g02558 382 MobiDBLite consensus disorder prediction 123 153 - -
Trre7g02558 382 FunFam TATA-binding protein-associated factor 2N isoform X1 149 184 - -
Trre7g02558 382 MobiDBLite consensus disorder prediction 259 282 - -
Trre7g02558 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Trre7g02558 382 ProSitePatterns Zinc finger RanBP2-type signature. 222 241 IPR001876 -
Trre7g02558 382 MobiDBLite consensus disorder prediction 248 282 - -
Trre7g02558 382 SUPERFAMILY Ran binding protein zinc finger-like 146 184 IPR036443 -
Trre7g02558 382 Coils Coil 262 282 - -
Trre7g02558 382 Pfam Zn-finger in Ran binding protein and others 221 247 IPR001876 -
Trre7g02558 382 Pfam Zn-finger in Ran binding protein and others 152 182 IPR001876 -
Trre7g02558 382 ProSiteProfiles Zinc finger RanBP2 type profile. 218 247 IPR001876 -
Trre7g02558 382 MobiDBLite consensus disorder prediction 319 382 - -
Trre7g02558 382 CDD RRM_SARFH 15 97 - -
Trre7g02558 382 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Trre7g02558 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Trre7g02558 382 MobiDBLite consensus disorder prediction 185 211 - -
Trre7g02558 382 SMART rrm1_1 14 95 IPR000504 GO:0003723
Trre7g02558 382 FunFam HIV Tat-specific factor 1 12 96 - -
Trre7g02558 382 FunFam Zinc finger Ran-binding domain-containing protein 2 213 247 - -
Trre7g02558 382 MobiDBLite consensus disorder prediction 297 382 - -
Trre7g02558 382 ProSiteProfiles Zinc finger RanBP2 type profile. 151 183 IPR001876 -
Trre7g02558 382 Gene3D - 12 95 IPR012677 -
Trre7g02558 382 Gene3D - 147 185 - -
Trre7g02558 382 Gene3D - 217 248 - -
Trre7g02558 382 SUPERFAMILY Ran binding protein zinc finger-like 213 248 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02558 Trre-Chr7 21036206 21041755 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02558 - - aip:107628735 536.954