Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02554 ATGGCTTCCGCATCCTCCAAAACCCTAATCGACATTTTCGATCGAGCTTCAAAGCGCTTAAAACCCACTCTCACCACTATCTGCAAATCCGAAGACACCACCAACGCCTCTTCCACCCTCTCCGTCGACCAAAAATCTCGAATTGAATACAATAAGAATCTCGCTTTGTCCAAAAGGAACCTCAAAATCTGCATCGATAGGGTTTCCAAACACAAAGAATCTTTAGCTTCGAGTTGTGTGAAACTAGAGGAGTTGCTTGTTGAGGAATCGTGGTTGGAAGCTTTATCTGGTGAATTTCAGAAATCTTATGTTGTTAACCTTGCTAAGTTCGTCGAAACGGAGATTTGTTCGAGGGATGATTATATATATCCTCCTCAGCATTTGATTTTCAATGCTCTTAATACTACTCCTTTTCATTCTGTTAAGGCTGTGATCCTTGGTCAGGACCCTTATCATGGACCTGGTCAAGCAATGGGGCTTTCATTTTCGGTTCCTGAGGGAGTAAAAGTTCCATCAAGTTTGGTAAATATATTTAAGGAGCTTAAGCAAGACCTTGGTTGTTCGGTTCCGTCTCACGGCAATCTTGAAAAATGGGCTGTGCAGGGTGTTCTCTTGCTTAATGCTGTTCTCACAGTCAGGAAGCACCAAGCAAATTCTCATGCAAAAAAAGGCTGGGAACAATTTACTGATGCTGTTATCAAGACAATCTCACAGAAGAAAGAAGGGGTTGTGTTTCTGTTGTGGGGAAAATCTGCTCAGGAGAAACTTAGGTTAATTGATGCAACCAAGCATCACATTCTAAAAGCTGCACATCCTTCCGGTTTGTCTGCGAATAGAGGCTTCTTTGGCTGCAGGTAA 858 0.4254 MASASSKTLIDIFDRASKRLKPTLTTICKSEDTTNASSTLSVDQKSRIEYNKNLALSKRNLKICIDRVSKHKESLASSCVKLEELLVEESWLEALSGEFQKSYVVNLAKFVETEICSRDDYIYPPQHLIFNALNTTPFHSVKAVILGQDPYHGPGQAMGLSFSVPEGVKVPSSLVNIFKELKQDLGCSVPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDAVIKTISQKKEGVVFLLWGKSAQEKLRLIDATKHHILKAAHPSGLSANRGFFGCR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02554 285 Pfam Uracil DNA glycosylase superfamily 138 281 IPR005122 -
Trre7g02554 285 FunFam Uracil-DNA glycosylase 80 285 - -
Trre7g02554 285 SUPERFAMILY Uracil-DNA glycosylase-like 86 285 IPR036895 -
Trre7g02554 285 ProSitePatterns Uracil-DNA glycosylase signature. 142 151 IPR018085 GO:0006281|GO:0016799
Trre7g02554 285 Hamap Uracil-DNA glycosylase [ung]. 88 285 IPR002043 GO:0004844|GO:0006281|GO:0006284
Trre7g02554 285 PANTHER URACIL-DNA GLYCOSYLASE 29 285 IPR002043 GO:0004844|GO:0006281|GO:0006284
Trre7g02554 285 Gene3D - 67 285 IPR036895 -
Trre7g02554 285 SMART UDG_2 134 282 IPR005122 -
Trre7g02554 285 CDD UDG-F1-like 103 285 IPR002043 GO:0004844|GO:0006281|GO:0006284
Trre7g02554 285 SMART UDG_2_a 134 282 - -
Trre7g02554 285 NCBIfam uracil-DNA glycosylase 89 285 IPR002043 GO:0004844|GO:0006281|GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02554 Trre-Chr7 21015183 21017560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02554 K03648 - gmx:100818241 441.81