Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02552 ATGATTCTTCAACAAGCTTCTCCCACTTTTCACTTCTCTCTTTGTCCCTGCAACAACAATGATTCTTCTCTTGTTCCTTTTCCCCTTTCCAAAACCATGAAAAAACGCTTCATTTCAAATTATTACTCATATCGAAAATTCCGAAGAAAAAAATGGACACTTTACTCTTCTTCAATTCATAAACAACGTGGTCCTAATTGGAACCACGAATTCGCCAATTCCACTACAAGGGGTGCAAAAAGTTTTGTTCTTGATAACAGTAACATTATTTCAAATCATGATGATGTTAATGATGATGAACTTCAAAGTGGTGAATTGCGAGATTCAAAAGTTCAATTAGGTTCAAATTTCACTACTTTTCAAGAAGATCCAATTGTGGATAAGCTTAGAACTCAATTGGGTGTAATTCACCCGATTCCGTCGCCTCCAATTAACCGAAACGTTGCTGGTTTGTTTGTGTTTTTTTTCTTTGTTGGTGTTGTTTTTGATAAATTATGGACTTTTAGGAGAAGAAGAAACAAAGTTAGTAGTGAAGATAGTTTTCGTGGTGTGTGGCCACAAGTACCTACTAGTTTTAGTTTATTTTTGGAAAAGGATTTGCAAAGAAAAGAGTCAGTTGAATGGGTGAATATGGTGTTAGGGAAGTTGTGGAAGGTTTATAGAGGTGGACTTGAGAATTGGGTTATTGGGTTACTTCAACCTGTTATTGATGATTTAAAGAAGCCTGATTATGTTGAAAGAGTTGAGATTAAGCAATTCTCATTAGGAGATGAACCTTTGTCTGTTAGGAATGTTGAACGTAGGACTTCTCGGCGTGTCAATGATTTACAGTACCAGATAGGCCTTAGGTATACTGGAGGTGCTCGCATGTTGTTAAGTCTTTCTCTGAAATTTGGCATTATTCCAATTGTTGTACCTGTTGGTGTTCGAGATTTTGACATTGATGGTGAACTTTGGGTAAAATTGCGACTAATACCAACAGCACCTTGGGTTGGAGCTGCTTCGTGGGCTTTTGTTTCACTTCCAAAGATCAAGTTTGAGCTGTCTCCATTTCGTTTGTTCAATTTAATGGCAATTCCAGTTCTCTCGATGTTTTTGACTAAACTTCTTACAGTAGATTTACCTAGACTATTTGTACGGCCAAACAAAATTGTTTTGGATTTCCAAAAGGGAAAAGCTGTTGGTCCCGTTACAGTTGGTCCTGTTGCTGATGATGTTAAATCTGGAGAAATGCAAGAAGGAAACATGGATTCTGTTGGTGAATTATCAGTCACTCTTGTGGATGCTCGAAAGCTTCCTTATCTTTTTGGCAAGACAGATCCTTATGTTGTTCTTAGCCTTGGAGATCAAACCATACGCAGCAAAAAGAATAGTCAAACTACTGTTATTGGGGCCCCTGGAATGCCAATTTGGAATCAGGATTTCCATATGCTTGTTTCCAACCCTAAAAAGCAGAAGTTAAGTATCCAAGTAAAAGACGCACTGGGATTTGCAGATTTACCTATTGGTAGAGGAGAGGTTGATTTGGGATCTCTTCAAGACACTGTACCAACAGACAGAATTGTGGTTTTACAAGGGGGTTGGGGGTTTTTAAGAAAGGGCTCATCTGGGGAGATATTGCTTAGGCTAACGTATAAAGCATATGTGGAAGATGAGGAAGATGACAAGACCGAGGAGGATTCCATTGACATAGATGTTTCAGACGATGAGTTGTCTGATACAGAAGAAGCAAATGACACTGATAATGGTATAAGAGATTCTGCGGACCAAACAGATAAAGAATCATTTATGGATGTTTTGGCTGCAATAATTGTTAGCGAAGAATTTCAAGGGATAGTAGCATCTGAAGCAGGGTATACCAAAGGTTTGGATAATAATGGCTCAAATACAGGATCTAAAGTATCAAAGTCTCCTGTTGCCAACACGGAATCAATTCCTTCTAGTTCTGATAATTCTCAAGGTTCTGGAGGGTCAGCCTTAATTTGGCTTGCCGTGATTACTGGCATAGCAATACTAATTGCTGCCAATATCAGTGGTTCAAGTATCTTCAATCCTTAA 2058 0.3839 MILQQASPTFHFSLCPCNNNDSSLVPFPLSKTMKKRFISNYYSYRKFRRKKWTLYSSSIHKQRGPNWNHEFANSTTRGAKSFVLDNSNIISNHDDVNDDELQSGELRDSKVQLGSNFTTFQEDPIVDKLRTQLGVIHPIPSPPINRNVAGLFVFFFFVGVVFDKLWTFRRRRNKVSSEDSFRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGGLENWVIGLLQPVIDDLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLSLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTAPWVGAASWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLTKLLTVDLPRLFVRPNKIVLDFQKGKAVGPVTVGPVADDVKSGEMQEGNMDSVGELSVTLVDARKLPYLFGKTDPYVVLSLGDQTIRSKKNSQTTVIGAPGMPIWNQDFHMLVSNPKKQKLSIQVKDALGFADLPIGRGEVDLGSLQDTVPTDRIVVLQGGWGFLRKGSSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANDTDNGIRDSADQTDKESFMDVLAAIIVSEEFQGIVASEAGYTKGLDNNGSNTGSKVSKSPVANTESIPSSSDNSQGSGGSALIWLAVITGIAILIAANISGSSIFNP 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02552 685 SMART C2_3c 421 521 IPR000008 -
Trre7g02552 685 MobiDBLite consensus disorder prediction 621 655 - -
Trre7g02552 685 MobiDBLite consensus disorder prediction 552 577 - -
Trre7g02552 685 ProSiteProfiles C2 domain profile. 401 522 IPR000008 -
Trre7g02552 685 Gene3D C2 domain 401 548 IPR035892 -
Trre7g02552 685 MobiDBLite consensus disorder prediction 620 655 - -
Trre7g02552 685 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 420 547 IPR035892 -
Trre7g02552 685 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 202 389 IPR031468 GO:0008289
Trre7g02552 685 Pfam C2 domain 420 515 IPR000008 -
Trre7g02552 685 MobiDBLite consensus disorder prediction 552 590 - -
Trre7g02552 685 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 45 685 - -
Trre7g02552 685 CDD SMP_SF 224 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02552 Trre-Chr7 20971619 20981950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02552 420 556 Acyl Lipid Metabolism Gene Families AT4G13550 31.429 1.96e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02552 - - gmx:100817508 966.837