Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02550 ATGGCTCAACCACCTCTCTCTGCTCAAACGCCTCCTTCTATCCCTAATTCTTCTTCTTCTTCAACTCCTTCATCATCACCGGCGCCACCAATCTCTTACGCCGTCAATCAAAATCTCAACGCTTCTGGGAATTCTCATCAGCCGCCGTCACATTCTGGAATGAAGCCGAATCCGGCTGCCAATCCTCCTATTCAACCCCCGATTCATAATCACCCTCCACATACTGCTGCTCCTTCATTTTCATATAATTTTCCTCAGAGTGCAGCGGCTTTTGCTGGCAACCAACATGCACAATCTAACACGAACATGTCGGATTCCGTTAAACAAGATTTTAGTAAAGGGTCATCTGCATCAAGCAACCTACATCCTGCTCCTACTTCTATATCCTCAATGCCACCACCCTCTGACCCTAACTATCGCCCAACTACTTCATGGATGCCAACTGCCCCAAATTTTCCCGTCCATCCTGTAATGCCCGGAACTCCTGGTACTCCTGGACCCCCGGGATTAGCAAAACCTGTGATAATACCCTCCAATCCAGCTGCTCAATCTGCAAGCACAGATTTTTCCTCAGGTGCAGTACTGAGACAAAATATGCCAACTGCACCCATTGCATCAGATCCTAATGCCTCACATAGAGGCTTACCCTATCCACCCATACCTTCCATGGTTGCTCCACCTCAGGGATATTGGTTACAACCTCCGCAGATGAGTGGTGCACTTAGGCCGCCATTTAATCAATATCCTGCTGCTTTTCCTGGTCCCTTTCCATTTCCAGCACGTGGTGTTGCTCTCCCTGCTGTTCCAGTACCTGATTCTCAGCCTCCTGGTGTTACTCCTGTTGGTGCTGCCAGCATTTCTGCACCTTCTGCTCCCGGTCATCTGCTGAGAGGAACATCTGGTGTGCAGACAGAAGTAGTTTCAGCACATACTGATGACAAGCATAAATTAAACACCATTGTGACCCAGAATGAGGATGCTGCTAATGATCAACTAGATGCTTGGACTGCTCACAAGACTGAAGCAGGGATTGTATACTACTATAATGCTTTGACAGGGAAATCCACATACGATAAACCTCCTGGATTTAAAGCGGAGGCACACCAAGTTTCTGTGCAGCCTACTCCAGTTTCAGTGGTAGATTTGCCTGGTACTGATTGGCAGTTGGTCTCTACTAGTGATGGAAAAAAATATTACTATAACAACCGAACCAAGACAAGCTGCTGGCAAATTCCAAATGAGGTGGCTGAATTGAAAAAAAAGCAGGATGGTGATGTTACAAAAGATAATTTAATGCCAGTTCCAAATACTAATGTATTGTCGGATAAAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTACTACTGGTGGTCGTGATGCCGCAGCTCCTAAACCCTCTATTGTACAAAGCTCTCCTTCGGCATTGGATTTGATCAAGAGGAAGTTGCAGGAATCAGGAGCACCTGTTACCTCTTCTATTCCTACACCATCAGTGCTACCAGGATCTGAATCCAATGGTTCAAAAGCAACCGACTCTACAGCTAAGAGCCTGCAAAATGATAATAGCAAAGATAAACCAAAAGATGCTAATGGTGATGCAAATCTCACTGACACATCTTCAGATTCAGAAGATGAGGATAGTGGGCCTTCAAAGGAGGAGTGCATAAATCAATTTAAGGAGATGCTTAAGGAACGAGGTGTGGCACCATTCTCAAAGTGGGAGAAAGAACTACCAAAGATAGTATTTGATCCCCGTTTTAAGGCTATCCCTAGTTATTCTGCTAGGAGAACCTTGTTTGAACATTATGTTAAAAATCGTGCGGAAGAAGAACGCAAAGAAAAACGTGCTGCACAAAAGGCTGCAATTGAGGGTTTTAAGCAGTTATTGGATGAAGCCTCAGAGGATATTAATGACCACACTGATTATCACACTTTCCGAAAGACATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAACGGGAGCACCTTCTGAACGAAAGAGTGCTTCCTTTGAAGAAAGCCACTGAAGAAAAAGCTCAAGCAGTGCGTGATGCTGCTGCTGCCGGTTTTAAGTCAATGCTTAAAGAACAAGGAGATATAACTTTTAACTCCCGTTGGTCAAGGGTTAAAGAGAGTTTAAGAGATGACCCGAGATATAAATCTGTGAAACATGAGGATAGGGAACTGTTGTTCAATGAGTATATATCCGAGTTGAAATCTGCTGAACATGCAGCAGAACGAGAGACCAGAGCTAAAAGGGAGGAGCAGGAGAAGCTGCGGGAGAGGGAGCGGGAGCTGCGTAAAAGGAAGGAAAGAGAAGAACATGAAATGGAAAGGGTACGAATAAAAATTCGAAGGAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGAGAATCAAAGACCCTACGGCATCCTGGACAGAATCAAAGCCTAAACTAGAAAAAGATCCTCAAGGACGTGCAACCAATTCTGATCTTGATTCAGCTGACATGGAAAAACTCTTCCGCGATCATGTAAAGATGCTTCAGGAACGTCGTGCTCACGATTTTAGAGCTCTTCTAGCTGAATTCTTGACTGCTGAAGCCGTGTCTCAGGAAACTGACGATGGGAAAACAGTGCTTAATTCATGGTCTACAGCAAAGCGTCTTTTAAAATCCGATCCAAGATATAACAAGGTTGAAAGCAAAGATAGAGAAGCCTTGTGGCGCCGGTATGTAGAGGATATGCTTCGTCGACAAAAGTCATCTCATGATTCAAAGGAAGAAAAATATACAGATGCCAGAAGTAGAAAGACTCTAGAATCATCCAAACATCCATTGGAATCAGGGAGATCACATGAGAGAAGATAA 2871 0.4455 MAQPPLSAQTPPSIPNSSSSSTPSSSPAPPISYAVNQNLNASGNSHQPPSHSGMKPNPAANPPIQPPIHNHPPHTAAPSFSYNFPQSAAAFAGNQHAQSNTNMSDSVKQDFSKGSSASSNLHPAPTSISSMPPPSDPNYRPTTSWMPTAPNFPVHPVMPGTPGTPGPPGLAKPVIIPSNPAAQSASTDFSSGAVLRQNMPTAPIASDPNASHRGLPYPPIPSMVAPPQGYWLQPPQMSGALRPPFNQYPAAFPGPFPFPARGVALPAVPVPDSQPPGVTPVGAASISAPSAPGHLLRGTSGVQTEVVSAHTDDKHKLNTIVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGKSTYDKPPGFKAEAHQVSVQPTPVSVVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDNLMPVPNTNVLSDKGSGMVTLNAPAITTGGRDAAAPKPSIVQSSPSALDLIKRKLQESGAPVTSSIPTPSVLPGSESNGSKATDSTAKSLQNDNSKDKPKDANGDANLTDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRTLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDINDHTDYHTFRKTWGNDPRFEALDRKEREHLLNERVLPLKKATEEKAQAVRDAAAAGFKSMLKEQGDITFNSRWSRVKESLRDDPRYKSVKHEDRELLFNEYISELKSAEHAAERETRAKREEQEKLRERERELRKRKEREEHEMERVRIKIRRKEAVTSFQALLVERIKDPTASWTESKPKLEKDPQGRATNSDLDSADMEKLFRDHVKMLQERRAHDFRALLAEFLTAEAVSQETDDGKTVLNSWSTAKRLLKSDPRYNKVESKDREALWRRYVEDMLRRQKSSHDSKEEKYTDARSRKTLESSKHPLESGRSHERR 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02550 956 ProSiteProfiles WW/rsp5/WWP domain profile. 329 362 IPR001202 GO:0005515
Trre7g02550 956 Gene3D FF domain 619 676 IPR036517 -
Trre7g02550 956 ProSiteProfiles FF domain profile. 850 915 IPR002713 -
Trre7g02550 956 SUPERFAMILY FF domain 784 852 IPR036517 -
Trre7g02550 956 CDD WW 385 414 IPR001202 GO:0005515
Trre7g02550 956 MobiDBLite consensus disorder prediction 1 147 - -
Trre7g02550 956 MobiDBLite consensus disorder prediction 485 554 - -
Trre7g02550 956 MobiDBLite consensus disorder prediction 12 54 - -
Trre7g02550 956 ProSitePatterns WW/rsp5/WWP domain signature. 387 412 IPR001202 GO:0005515
Trre7g02550 956 Gene3D FF domain 677 754 IPR036517 -
Trre7g02550 956 Pfam FF domain 693 739 IPR002713 -
Trre7g02550 956 Pfam FF domain 623 671 IPR002713 -
Trre7g02550 956 Pfam FF domain 856 912 IPR002713 -
Trre7g02550 956 Pfam FF domain 557 604 IPR002713 -
Trre7g02550 956 Pfam FF domain 794 845 IPR002713 -
Trre7g02550 956 PANTHER TRANSCRIPTION ELONGATION REGULATOR 1 44 950 IPR045148 GO:0003712|GO:0070063
Trre7g02550 956 Coils Coil 743 795 - -
Trre7g02550 956 Gene3D FF domain 551 618 IPR036517 -
Trre7g02550 956 ProSiteProfiles FF domain profile. 688 742 IPR002713 -
Trre7g02550 956 FunFam Pre-mRNA-processing protein 40C isoform C 616 679 - -
Trre7g02550 956 ProSitePatterns WW/rsp5/WWP domain signature. 335 360 IPR001202 GO:0005515
Trre7g02550 956 MobiDBLite consensus disorder prediction 746 778 - -
Trre7g02550 956 SUPERFAMILY FF domain 548 613 IPR036517 -
Trre7g02550 956 ProSiteProfiles FF domain profile. 620 675 IPR002713 -
Trre7g02550 956 MobiDBLite consensus disorder prediction 487 519 - -
Trre7g02550 956 MobiDBLite consensus disorder prediction 812 835 - -
Trre7g02550 956 MobiDBLite consensus disorder prediction 76 126 - -
Trre7g02550 956 SUPERFAMILY FF domain 843 921 IPR036517 -
Trre7g02550 956 SUPERFAMILY WW domain 386 418 IPR036020 GO:0005515
Trre7g02550 956 FunFam Pre-mRNA-processing protein 40C 680 754 - -
Trre7g02550 956 FunFam Pre-mRNA-processing protein 40C 788 848 - -
Trre7g02550 956 Pfam WW domain 334 360 IPR001202 GO:0005515
Trre7g02550 956 ProSiteProfiles WW/rsp5/WWP domain profile. 387 414 IPR001202 GO:0005515
Trre7g02550 956 FunFam pre-mRNA-processing protein 40C isoform X1 538 615 - -
Trre7g02550 956 SUPERFAMILY FF domain 612 681 IPR036517 -
Trre7g02550 956 ProSiteProfiles FF domain profile. 791 848 IPR002713 -
Trre7g02550 956 FunFam Pre-mRNA-processing protein 40C 850 915 - -
Trre7g02550 956 CDD WW 335 362 IPR001202 GO:0005515
Trre7g02550 956 SUPERFAMILY FF domain 681 746 IPR036517 -
Trre7g02550 956 MobiDBLite consensus disorder prediction 917 956 - -
Trre7g02550 956 SMART FF_2 553 607 IPR002713 -
Trre7g02550 956 SMART FF_2 688 742 IPR002713 -
Trre7g02550 956 SMART FF_2 850 915 IPR002713 -
Trre7g02550 956 SMART FF_2 620 675 IPR002713 -
Trre7g02550 956 SMART FF_2 791 848 IPR002713 -
Trre7g02550 956 MobiDBLite consensus disorder prediction 55 73 - -
Trre7g02550 956 Gene3D - 321 372 - -
Trre7g02550 956 Gene3D - 373 428 - -
Trre7g02550 956 Gene3D FF domain 788 848 IPR036517 -
Trre7g02550 956 Gene3D FF domain 849 915 IPR036517 -
Trre7g02550 956 ProSiteProfiles FF domain profile. 553 607 IPR002713 -
Trre7g02550 956 SMART ww_5 330 362 IPR001202 GO:0005515
Trre7g02550 956 SMART ww_5 382 414 IPR001202 GO:0005515
Trre7g02550 956 SUPERFAMILY WW domain 334 365 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02550 Trre-Chr7 20947983 20962525 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02550 K12824 - gmx:100815386 1320.45