Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02531 ATGAAAAGAGGTCTCGGCTTATTGATTTATCTCTGCAACCCAAACTCTTCTCCATTCGCGCCGCCACACTCACTCTCCCGCCGCGTTTCCTTCCTCTTCAGATCTCATCTCTCCACCATCTCCGCCGCCATGCCTGGACCTGACACACAACAAGATATTCAGTGGCCTGCCAAGCGCGTCAGAGATACCTTCGTCAAGTTCTTCGAAGATAAGAACCATGTTTATTGGAAGTCTAGCCCCGTCGTCCCCTTCAATGACCCTACTCTCCTCTTTGCTAACGCTGGGATGAACCAGTACAAGCCAATTTTTTTGGGCACTGCTGATCCTAACACTGCCTTGAGCAAACTCTCTCGTGCTTGCAATACCCAGAAGTGCATTCGAGCAGGTGGTAAGCACAACGACCTGGACGATGTGGGGAAAGACACCTACCATCATACATTCTTTGAGATGTTAGGCAATTGGTCTTTTGGAGATTACTTTAAAGAAGAAGCCATTACCTGGGCATGGGAACTTCTAACTAAAGTTTATAAATTACCATCAGATCGCATTTATGCTACATATTTTGGTGGTGATGAGAAAATTGGCCTTTCCCCTGATACCGAGGCTAGAGATATATGGTTAAAGTTTTTGCCTCCTGGGCGCGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGACACTGGTCCTTGCGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCTTTGGTCAATAATGACGATCCTACCTGCATTGAGATATGGAACCTCGTCTTTATTCAGTTCAATAGGGAGGCTGACGGCTCTCTTAAATCTCTGCCCGCAAAGCATGTTGATACTGGAATGGGTTTTGAACGTTTGACCTCTATACTACAGAACAAAATGAGCAATTATGACACGGATGTCTTCATGCCCATCTTTGATGCTATTCAGCTGGCTACTGGTGCTCGGCCATACTCTGGAAAAGTTGGACCAGAGGATGCAGATAAAGTTGACATGGCATACAGGGTTGTTGCGGATCACATCAGGACTCTGTCATTTGCCATTGCTGATGGATCTCGACCTGGTAACGAAGGTCGCGAATATGTTCTGAGGCGTATACTCCGTCGAGCTGTTCGATATGGACGCGAAGTGCTAAAAGCTGAAGAGGGTTTTTTCAATGGGCTTGTAAATGTTGTGGCAAATCTACTGGGTAATGTTTTCCCTGAGCTAAAACAACAGGAAGTGCACATTAGGAATGTGATTCAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTAGTTAAGGGCATTGCAAAATTCAATACAGCTGTTCAACATGTTCAGGGAAACATACTAAGCGGGGAGGTAGCGTTTGAGTTGTGGGATACATTTGGGTTCCCATTAGATCTCACACAGCTTATGGCTGAAGAGAAGAAATTACAAGTTGATGTCGAAGGTTTTAATAGTGCTATGGAAGCTGCAAGAGAAAGATCAAGAACTGCTCAAAATAAGCAAGCTGGTGGTGCTATTGTCATGGATGCTGATGCTACATCAGCGTTGCACAAAAGAAGCATTGCTCCAACAGATGATAGTTTCAAATTTGTTTGGCTCAAGGACCATGAGAGTGTGGTAAAAGCGATATATACCGGTTCTGAGTTTGTTGATTCTGTTAATGCTGATGGTGATGTTGGTGTAATTCTGGAGTCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTCGATACCGGGTCACTTGATTTCCAAAATGCATCATTTCAAGTTCATAATGTTCAAGTTTTCGGAGGTTTCGTGCTTCACATTGGTAATGGGACAGGTATCTCTGTTGGTGACAAAGTAGTATGCAAGGTTGATTATGGAAGACGCGCCCTTATAGCCCCTAACCATACATGCACACACATGTTAAATTTTGCTCTTAGGGAAGTACTTGGCAATCATGTAGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCACGGCAAGCCTGTTGATGCTGATTCTTTGAGGAGAATCGAGTCCATTGTTAATGAGCAAATTAAAGCTGAATTGGATGTAAATGCAAAGGAGGTAACTCTTGCCGATGCCAAGCGTATTAATGGTCTGCGAGCCGTTTTTGGAGAAGTATATCCTGATCCAGTTAGAGTTGTGTCAGTTGGACAAAAAGTTGAAGATCTCCTTGCTGATCCTGAGAACGAAAAGTGGTTATCTATTTCATCTGAATTGTGTGGCGGTACCCATATTTCAAACACACGAGAGGCTAAAGCTTTTGCACTTTTAGCCGAGGAAGGAATTGCTAAAGGAATCCGCAGAATAACAGCTGTCACAACTGATCGTGCTTCTGATGCAATGAAATTGGCAGATGAATTTGAGCAGCAAGTAGATGATGCAGCTAAGCTGGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATCTCTGAAAGGCAATGTGGAAACATTATCAATTCCTGCAGCTAAGAAAGCTGAAATCAAGACCAAGATAGCCCTACTTCAGGATCAAGTGAGAAAAGCGCAAAAGCGTGTTGCTGAAGAAAACAAACGTAAAGCTGTAGCGATAACAGCTGAGAAGGCTGATCTAGCTGTTTCAGATGGGAAATCTTTTTGCATATCTCACGTTGATGTTGGCCTGGATGTTGCAGCAGTTCGTGAGGCTGTTACGAAAGTCATCGATCAGAAGGGGTTGCCAGTGATGGTTTTTAGCACCGATGAAACTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCGGACAAAGGAGATAAAGGTAAGCTGGATGTATCAGAGTGGCTGAGTAATGCTTTGGGGCCACTGAAAGGTAGATGTGGTAAAGGAAAAGGAGGTCTTGCAACAGGACAGGGTACAGATGCATCACAAGTAAATGAGGCTATGGATCTTGCAGTGAAATTTGCATCCGTGAAATTGACTTGA 2985 0.4385 MKRGLGLLIYLCNPNSSPFAPPHSLSRRVSFLFRSHLSTISAAMPGPDTQQDIQWPAKRVRDTFVKFFEDKNHVYWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAITWAWELLTKVYKLPSDRIYATYFGGDEKIGLSPDTEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIQLATGARPYSGKVGPEDADKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAEEGFFNGLVNVVANLLGNVFPELKQQEVHIRNVIQEEEESFGRTLVKGIAKFNTAVQHVQGNILSGEVAFELWDTFGFPLDLTQLMAEEKKLQVDVEGFNSAMEAARERSRTAQNKQAGGAIVMDADATSALHKRSIAPTDDSFKFVWLKDHESVVKAIYTGSEFVDSVNADGDVGVILESTSFYAEQGGQIFDTGSLDFQNASFQVHNVQVFGGFVLHIGNGTGISVGDKVVCKVDYGRRALIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDADSLRRIESIVNEQIKAELDVNAKEVTLADAKRINGLRAVFGEVYPDPVRVVSVGQKVEDLLADPENEKWLSISSELCGGTHISNTREAKAFALLAEEGIAKGIRRITAVTTDRASDAMKLADEFEQQVDDAAKLEGSLLEEKVSSLKGNVETLSIPAAKKAEIKTKIALLQDQVRKAQKRVAEENKRKAVAITAEKADLAVSDGKSFCISHVDVGLDVAAVREAVTKVIDQKGLPVMVFSTDETTNKAVVCAGVPDKGDKGKLDVSEWLSNALGPLKGRCGKGKGGLATGQGTDASQVNEAMDLAVKFASVKLT 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02531 994 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 308 509 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Trre7g02531 994 FunFam Alanine--tRNA ligase 529 625 - -
Trre7g02531 994 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 728 786 IPR012947 GO:0004812|GO:0005524|GO:0043039
Trre7g02531 994 Coils Coil 840 867 - -
Trre7g02531 994 Pfam tRNA synthetases class II (A) 60 628 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Trre7g02531 994 SMART tRNA_SAD_4 728 787 IPR012947 GO:0004812|GO:0005524|GO:0043039
Trre7g02531 994 FunFam Alanine--tRNA ligase 882 989 - -
Trre7g02531 994 NCBIfam alanine--tRNA ligase 60 971 IPR002318 GO:0000166|GO:0005737
Trre7g02531 994 PRINTS Alanyl-tRNA synthetase signature 133 144 IPR002318 GO:0000166|GO:0005737
Trre7g02531 994 PRINTS Alanyl-tRNA synthetase signature 261 272 IPR002318 GO:0000166|GO:0005737
Trre7g02531 994 PRINTS Alanyl-tRNA synthetase signature 369 382 IPR002318 GO:0000166|GO:0005737
Trre7g02531 994 PRINTS Alanyl-tRNA synthetase signature 345 361 IPR002318 GO:0000166|GO:0005737
Trre7g02531 994 PRINTS Alanyl-tRNA synthetase signature 288 301 IPR002318 GO:0000166|GO:0005737
Trre7g02531 994 Gene3D - 533 626 - -
Trre7g02531 994 SUPERFAMILY Translation proteins 554 626 IPR009000 -
Trre7g02531 994 SUPERFAMILY Class II aaRS and biotin synthetases 57 307 IPR045864 -
Trre7g02531 994 PANTHER ALANYL-TRNA SYNTHETASE 50 989 - -
Trre7g02531 994 SUPERFAMILY ThrRS/AlaRS common domain 626 805 IPR018163 GO:0000166
Trre7g02531 994 Gene3D - 627 803 - -
Trre7g02531 994 Gene3D - 881 989 - -
Trre7g02531 994 FunFam Alanine--tRNA ligase, cytoplasmic 54 304 - -
Trre7g02531 994 CDD AlaRS_core 57 303 - -
Trre7g02531 994 FunFam Alanine--tRNA ligase, cytoplasmic 627 802 - -
Trre7g02531 994 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 55 800 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Trre7g02531 994 Pfam DHHA1 domain 852 988 IPR003156 GO:0003676
Trre7g02531 994 Hamap Alanine--tRNA ligase [alaS]. 55 993 IPR023033 GO:0004813
Trre7g02531 994 Gene3D Bira Bifunctional Protein; Domain 2 56 304 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02531 Trre-Chr7 20825339 20836139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02531 K01872 - gmx:100788271 1655.57