Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02530 ATGGACGTAATTGACCAGAACCAAGAGGAGGATCCCACAATGGCAATGGAAGACAGTGACAACGCCATCGACGATGTTGAAGACGACGGAGAAAACGAAGAAAATGCGTCAGAGAATGAAGAGGAAGTTGAAGAAGAAAAAGATACAGAGGATGAAGATGAGTTCATGTTCAGAGAAGGAACGAATCCTTTGGACTTGGTGTATAACAATTATTCCTGTGTTCAAGTGTACCAGAGATTACTAGATCACCAAGCTCTTCCTAACAAAAAGCGAAAAGCACCCAAACAATGCCACTGTGAAGGGACTTCTTCTAAGAAGGCAAGGGGAGATGATATTTCTGGGGTATGCCTAGCTGATTTGGTGGAAGTCATGAATTTTGAACCGTGGAAAAGATCAAAAAAGACACGGTCTAAAAAAAGAGGTAGGCAAAAAGGATCAAAGGCGAAACTTGACGAAAAGCTATCACAAATGTTGGGTGATGCCAACCTTCACTATGCAAATCGCCGTTATGACATGGCTATATCTGTATTGCAAGAAGTTGTCAGGCTGAAACCAAATTTACCCGAGTCGTATCACATTCTTGGACTTGTCTATAGGGCAATTGGGAATTACGAAAAAGAAATGATTTCTACCTTGATTACTGCTTCTTTGACTCAAAAGGATTCATCGCTTTGGGAAAGGCTCTTTGAGTGGTCCATAGAACAAGGTGATATTGGTAAAGCCAATTGTTATATTTCAAAAGCAATAACAGCAGACCCCGGAAACAGTAGATTTAGAATTTATCTAGCAAGGCTTCTTGCTGAAAATCAAGATTATCAAAATGCTGCTGCGGCATATGAGCAAGCATATCAACTTTGTCGAGAAAATGTTGATGCACTAAAAACAGCAGCTAAGTTCTACCAAAAATGTGGTCAAGTTGAACGTTCAATTTGCATTCTCGAAGGCTATCTGAAGAGTACACCAGATGGAGTAAATGCAAGTGTAGTTGATCTACTTGGTTCCATATTGATGGAAATTAAGGTGCATGACAGAGCTCTTCTGTACATAGAACAATCTCAAATGGTCGGAGAAGAATTGCCCTTAAATTTGAAAGTCAAAGCTGGAATCTGCCATGTTCATCTTGGAAACATGGAAATGGCTCAGGTTTTCTTTAATGATTTGAAATCAGAGAATGCAAGCAAGCATGTTGAGTTGATCAACGAGGTCGCAGACTCATTAATGGGTCATGGACATTATAATTCTGCATTGAGTTATTTTAAGATGTTTGAAGGAAATAGTAAAAAAGAAAATGCTCTTTTGTATTTGAAAATTGCTAGATGTTATCAATCCTTGGGAGAAAGGAAACAAGGAATTATCTATTTTTACAAAGCCCTAGAAACACTGGAAGATGATGTTGAGGCGCGCATAAGTTTGGCATCCCTGCTAGTTGAGGAAGGGAAAGAAAATGAAGCTATTTCCTTGCTATCTCCTCCAAAGAATTCTGATTCTGGTGAAGCACATTCTGAAAAGTCAAATAGATGGTGGGTTGATGTGAGAATAAAACTTAAGCTCTGTAACATATTTCAGATTAGAGGGATGCTTAATGATTTTGTGAATGTAAGTTTTCCTTTGGTACGTGAATCACTGCGTGTTGCAACTCCTAGACAACAGAAACCAAACCCAGAATCTCCCTTGTGTAATCTTCACAAAGATGAAGAATATCAGCTAATCATTGATTTATGCAATGCATTAGCATCCTTACAAAGGTACAGGGAAGCTTTAGAGATTATCAATCTCACTCCTCGTACTTCTCTGTCTGCTGAGAAGAATCAGAAGCTTCAATCTCTTGGAATTCAAATGGCATACAACACCACAGATCCTAAACAAGGTTTTGAATGTGTAAAATCCAATGTTCAACAACATGCACAGAGTGTTGCTGCTTGGAATTCCTACTTCAAGGTCATATCAAGATTGGAAAACCGAGATACAAGACACGTCAAATTTTTACATAATATGCAAGGAAACTCCGTAGATTGTGTGCCTCCTATCCTCATTTCTGCACATCAGTCTACTCTATATAGCCATCATCAAGACGCGGCAAGGAAATACCTTGAAGTTTATAAACTTTTGCCTGAGAATCCATTGGTTAATCTTTGTGTTGGAACGGCCTTGATCAACTTGGCACTGGGTTTCAGACTTAAAAATAAGCATCAGTGTGTTGTACAAGGTTTAGCATTCCTCTACAATAATTTGAAGATCTGTGGGAACAGCCAGGAATCTTTATTCAACATAGCTCGGGCATACCATCATGTTGGTCTTGTAACACTGGCAGCGATATATTATGAGAAGGTGATTGCTATTAACGAAAGAGATTATCCAATTCCAAAGCTCCCAAATGAGAATATTGATGTCATTGAAAATCATAAACCTGGATACTGCAACCTTCGTAGAGAAGCAGCTTACAATCTGCATTTAATCTACAAAAGGAGTGGGGCTCTTGATCTTGCTAGGCAAGTTCTGAAAGATTATTGTTCCGTTTGA 2520 0.3889 MDVIDQNQEEDPTMAMEDSDNAIDDVEDDGENEENASENEEEVEEEKDTEDEDEFMFREGTNPLDLVYNNYSCVQVYQRLLDHQALPNKKRKAPKQCHCEGTSSKKARGDDISGVCLADLVEVMNFEPWKRSKKTRSKKRGRQKGSKAKLDEKLSQMLGDANLHYANRRYDMAISVLQEVVRLKPNLPESYHILGLVYRAIGNYEKEMISTLITASLTQKDSSLWERLFEWSIEQGDIGKANCYISKAITADPGNSRFRIYLARLLAENQDYQNAAAAYEQAYQLCRENVDALKTAAKFYQKCGQVERSICILEGYLKSTPDGVNASVVDLLGSILMEIKVHDRALLYIEQSQMVGEELPLNLKVKAGICHVHLGNMEMAQVFFNDLKSENASKHVELINEVADSLMGHGHYNSALSYFKMFEGNSKKENALLYLKIARCYQSLGERKQGIIYFYKALETLEDDVEARISLASLLVEEGKENEAISLLSPPKNSDSGEAHSEKSNRWWVDVRIKLKLCNIFQIRGMLNDFVNVSFPLVRESLRVATPRQQKPNPESPLCNLHKDEEYQLIIDLCNALASLQRYREALEIINLTPRTSLSAEKNQKLQSLGIQMAYNTTDPKQGFECVKSNVQQHAQSVAAWNSYFKVISRLENRDTRHVKFLHNMQGNSVDCVPPILISAHQSTLYSHHQDAARKYLEVYKLLPENPLVNLCVGTALINLALGFRLKNKHQCVVQGLAFLYNNLKICGNSQESLFNIARAYHHVGLVTLAAIYYEKVIAINERDYPIPKLPNENIDVIENHKPGYCNLRREAAYNLHLIYKRSGALDLARQVLKDYCSV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02530 839 Pfam Tetratricopeptide repeat 433 459 IPR019734 GO:0005515
Trre7g02530 839 Pfam Tetratricopeptide repeat 752 782 IPR019734 GO:0005515
Trre7g02530 839 SUPERFAMILY TPR-like 687 833 IPR011990 GO:0005515
Trre7g02530 839 Gene3D Tetratricopeptide repeat domain 359 490 IPR011990 GO:0005515
Trre7g02530 839 MobiDBLite consensus disorder prediction 1 54 - -
Trre7g02530 839 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 8 551 IPR039340 GO:0006383
Trre7g02530 839 Coils Coil 262 289 - -
Trre7g02530 839 Coils Coil 16 53 - -
Trre7g02530 839 Pfam Tetratricopeptide repeat 266 331 - -
Trre7g02530 839 MobiDBLite consensus disorder prediction 1 53 - -
Trre7g02530 839 Gene3D Tetratricopeptide repeat domain 544 839 IPR011990 GO:0005515
Trre7g02530 839 SMART tpr_5 431 464 IPR019734 GO:0005515
Trre7g02530 839 SMART tpr_5 154 187 IPR019734 GO:0005515
Trre7g02530 839 SMART tpr_5 188 221 IPR019734 GO:0005515
Trre7g02530 839 SMART tpr_5 751 784 IPR019734 GO:0005515
Trre7g02530 839 SMART tpr_5 256 289 IPR019734 GO:0005515
Trre7g02530 839 Gene3D Tetratricopeptide repeat domain 147 358 IPR011990 GO:0005515
Trre7g02530 839 SUPERFAMILY TPR-like 163 487 IPR011990 GO:0005515
Trre7g02530 839 ProSiteProfiles TPR repeat profile. 431 464 IPR019734 GO:0005515
Trre7g02530 839 Pfam Tetratricopeptide repeat 161 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02530 Trre-Chr7 20804472 20821713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02530 K15201 - cit:102608664 697.582