Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02506 ATGAGAAACTTGTTCGGAACCACAAGATCATTGGCGACAAAATTATTGTTCAACACAACAAAACCATCATCATCATCATCATCATCATCATGCACAATTCGACCATACCAAACTATCCCAATGGTGATTGAAACCTCTTCCAGAGGTGAAAGAGCCTATGATATCTTCTCTCGTCTTCTCAAAGAACGAATCATTTGCATCAATGGTCCTATCTCTGATGATACTGCTCATGTTGTTGTTGCTCAGCTTCTTTTTCTTGAATCTGAAAACCCTTCCAAACCGATTAATATGTATCTCAATTCCCCTGGTGGTGCTGTCACTGCAGGGCTTGCAATTTATGATACTATGCAGTACATTCGGTCTCCGATAAACACAATCTGTTTGGGTCAGGCTGCGTCCATGGCTTCTCTCCTGTTGAGTGCGGGTGCCAAAGGTCAGAGGCGTTCTCTTCCAAATGCAACAGTCATGATTCACCAGCCCTCTGGTGGATACAGTGGCCAAGCAAAGGATATTGCAATTCATACCAAGCAGATTGTTCGAGTCTGGGACGCGTTGAATGAGTTGTACGTCAAGCACACTGGCCAGCCGCTTGATGTTATTCAGAAGAATATGGATAGGGATTATTTTATGACTGCTGAAGAGGCAAAGGAGTTTGGGATTATTGATGAGGTTATTGATCAGAGACCTATGACTTTGGTTTCTGACGCTGTTGCTGATGAAGGCAAAGATAAAGGTTCAAATTAG 744 0.4288 MRNLFGTTRSLATKLLFNTTKPSSSSSSSSCTIRPYQTIPMVIETSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLSAGAKGQRRSLPNATVMIHQPSGGYSGQAKDIAIHTKQIVRVWDALNELYVKHTGQPLDVIQKNMDRDYFMTAEEAKEFGIIDEVIDQRPMTLVSDAVADEGKDKGSN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02506 247 Gene3D - 26 232 - -
Trre7g02506 247 PRINTS Clp protease catalytic subunit P signature 203 222 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02506 247 PRINTS Clp protease catalytic subunit P signature 125 142 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02506 247 PRINTS Clp protease catalytic subunit P signature 54 69 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02506 247 PRINTS Clp protease catalytic subunit P signature 146 165 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02506 247 PRINTS Clp protease catalytic subunit P signature 94 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02506 247 ProSitePatterns Endopeptidase Clp serine active site. 125 136 IPR018215 -
Trre7g02506 247 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 23 232 IPR023562 -
Trre7g02506 247 CDD S14_ClpP_2 54 224 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02506 247 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 38 228 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre7g02506 247 SUPERFAMILY ClpP/crotonase 47 229 IPR029045 -
Trre7g02506 247 ProSitePatterns Endopeptidase Clp histidine active site. 147 160 IPR033135 -
Trre7g02506 247 FunFam ATP-dependent Clp protease proteolytic subunit 37 229 - -
Trre7g02506 247 Pfam Clp protease 48 227 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02506 Trre-Chr7 20582926 20584693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02506 K01358 - rvl:131324829 384.03