Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02492 ATGGCACCACCGGCGATCCAATCGCCGAATCCAGAAGAAATCCAACAATTCCTAAGCTCCGTTCTCTCACAACGCGGTCCATCAGCAGTACCATATTCAGAAGACACAAAATGGCTTATCCGTCAACACCTTCTCACTCTCATCACAGCTTTCCCTTCTCTTGAACCCAAAACCGCTACTTTCACTCACAACGACGGTCGCACCGTTAATCTCCTTCAAGCCGACGGAACTATTCCGATGACATACCAATCCGTCACATACAACATCCCTGTTGTTATTTGGCTTATGGAATCTTACCCTCGTCATCCACCTTGTGTTTATGTTAACCCTACCAGAGACATGATTATCAAACGCCCTCATCCTCATGTTAATCCATCTGGTTTAGTTTCTGTTCCTTATTTGCATAATTGGATTTACCCTAGTGCTAATTTGCTTGATCTTGTTCTTTCCTTGAGTGTTATCTTTGGTCGTGATCCTCCTCTTTATTCTCAACGTAGACCTACTGTTTCTTCATCTGGGTATCCTCATCCTGCTAGGAATAATAATAGTTACCCTCCTTCGCCTTATTCGCCTTCGCCTTATTCGCCTTCGCCTGTGCGGCCTGCTCATACTGAGGATCCAACTGAGGTTTTCAAAAGGAATGCTATTAACAAGCTTGTGGAGATGGTGCATAATGATGTTACCAATTTGAGGAAGACGAGGGAAGCTGAAATGGAGGGTTTGTTTAGTTTGCAAGGGGTTTTGAAGCAGCGTGAGGATGTTTTGAATAAGGGTGTGAAGGAAATGCAGGAGGAGATGGAGGGTTTGGAACAGCAGCTGCAGATGGTTTTGATGAATACTGATGTTTTGGAGGGTTGGTTGAGGGAGAATCAAGGGAAGAAGATGAGTTTGGAGAATGTTGAGGATGCTTTCGAGTGTGTCGATGTGCTTTCTAAACAGATGCTTGAGTGTACTGCTGCTGATTTGGCTATTGAAGATACACTTTATGCCTTGGATAAGGGTGTTCAGTTAGAGCTGCTCAGTTACAGGCTCAGGTTGCTAATATGGCTGCAAGGAATCATCATTATGGTAGCTGAGGGAACATGGCTAGAATTGAACATTTTTGGGGACTCTTTGAGAAGGAACAATGATGCTATTGGTTAA 1143 0.4401 MAPPAIQSPNPEEIQQFLSSVLSQRGPSAVPYSEDTKWLIRQHLLTLITAFPSLEPKTATFTHNDGRTVNLLQADGTIPMTYQSVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLVSVPYLHNWIYPSANLLDLVLSLSVIFGRDPPLYSQRRPTVSSSGYPHPARNNNSYPPSPYSPSPYSPSPVRPAHTEDPTEVFKRNAINKLVEMVHNDVTNLRKTREAEMEGLFSLQGVLKQREDVLNKGVKEMQEEMEGLEQQLQMVLMNTDVLEGWLRENQGKKMSLENVEDAFECVDVLSKQMLECTAADLAIEDTLYALDKGVQLELLSYRLRLLIWLQGIIIMVAEGTWLELNIFGDSLRRNNDAIG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02492 380 Pfam UEV domain 41 161 IPR008883 GO:0015031|GO:0036211
Trre7g02492 380 MobiDBLite consensus disorder prediction 163 206 - -
Trre7g02492 380 MobiDBLite consensus disorder prediction 164 180 - -
Trre7g02492 380 Pfam Vps23 core domain 303 339 IPR017916 -
Trre7g02492 380 Gene3D Ubiquitin Conjugating Enzyme 6 162 IPR016135 -
Trre7g02492 380 ProSiteProfiles UEV domain profile. 21 165 IPR008883 GO:0015031|GO:0036211
Trre7g02492 380 MobiDBLite consensus disorder prediction 181 200 - -
Trre7g02492 380 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 10 336 - -
Trre7g02492 380 SUPERFAMILY UBC-like 24 161 IPR016135 -
Trre7g02492 380 Coils Coil 252 279 - -
Trre7g02492 380 SUPERFAMILY Endosomal sorting complex assembly domain 308 342 IPR037202 -
Trre7g02492 380 Gene3D - 309 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02492 Trre-Chr7 20510029 20511870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02492 K12183 - gmx:100798165 499.204