Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g02467 ATGGAGAAGAGTAACAACGCTGTTGAAGTTCTAGATGGTTCTAATATTATGGAGTTAGTTGAAAACAGAGATGTATTCACCAAATATGTGAACCATAAGTTTCAAGAGTTAGATAAAGATAAAGATGGTAAACTTTCTGTAAAAGAACTTCAACCTGCTGTTTCTGATATTGGTGCTGCTCTTGGTTTACCTTCTAAAGGCACTAATCCTGATTCTGATCACATCTATTCTCAGGTGTTGAATGAATTCACACATGGAAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCAGACATTCTATTGGGCATGGCTGCTGGACTCAAACGAGACCCGATTGTCATACTTCGCATTGATGGCGAAGATCTTCTCGAGTTTCTTAATGGTTCAACTTATGAACCAGAAATCGTATCCATATTCTCTCAAATTGAATCACCTCAGAAATCACTTCATGATTATATAATTCAAGCTCTCAGCAAACTCAATGTTGACCAAGGGATTCCACCTACATCTGATCCTTGGGTTATCAGCAACATTGTGGAACCAGCACTGGTTTCTGAACAAGGGTATGATTTGGATAAACCTGTTTCTCAAGAGATATTTTTGGAGGAATTCAAGAAAGTGGCATTGAGTGTCGCTAATCGTCTTAAGGAGCAACCGGTAATAGTTGCTCATAGCGAAAGTACCTTTGATGGAAGTGGTGTTAAGAGACTATTATCCAACAAGTTTGAATTAGAAAAGATATTGAACTCGGCTATAGAGACTTTACCTAAAGATCGAAATGGAAAAATATCAAAGGATTACCTACGAGTGGCGCTGGACGTGGTGGCTCCATCTGCAGCTTTACCTCCATTCGGAGCAATTGAAGAGATGGATAAGGTTATTGGTGAAGTGTTTAAGATGGTGAGTGCAGATGATGCAAAGTTGGTGAAAGAAGATGAGTTCAAGAAAATATTAACTGAAATATTAGGGAGTATCATGCTGCAGTTGGAAGGAAATCCTATATCAGTTTCTTCAAATTCTGTAGTGCATGAGCCTCTAGGCTCATCTTCTACACTTCTGCAGCCATCCCCTGCTGAAACAGCATAA 1098 0.3916 MEKSNNAVEVLDGSNIMELVENRDVFTKYVNHKFQELDKDKDGKLSVKELQPAVSDIGAALGLPSKGTNPDSDHIYSQVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFLNGSTYEPEIVSIFSQIESPQKSLHDYIIQALSKLNVDQGIPPTSDPWVISNIVEPALVSEQGYDLDKPVSQEIFLEEFKKVALSVANRLKEQPVIVAHSESTFDGSGVKRLLSNKFELEKILNSAIETLPKDRNGKISKDYLRVALDVVAPSAALPPFGAIEEMDKVIGEVFKMVSADDAKLVKEDEFKKILTEILGSIMLQLEGNPISVSSNSVVHEPLGSSSTLLQPSPAETA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g02467 365 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 121 345 - -
Trre7g02467 365 Gene3D - 28 328 - -
Trre7g02467 365 ProSiteProfiles EF-hand calcium-binding domain profile. 25 60 IPR002048 GO:0005509
Trre7g02467 365 Pfam EF-hand domain pair 32 99 IPR002048 GO:0005509
Trre7g02467 365 SUPERFAMILY EF-hand 32 336 IPR011992 -
Trre7g02467 365 ProSiteProfiles EF-hand calcium-binding domain profile. 247 282 IPR002048 GO:0005509
Trre7g02467 365 ProSitePatterns EF-hand calcium-binding domain. 38 50 IPR018247 -
Trre7g02467 365 SMART efh_1 251 279 IPR002048 GO:0005509
Trre7g02467 365 SMART efh_1 297 325 IPR002048 GO:0005509
Trre7g02467 365 SMART efh_1 29 57 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g02467 Trre-Chr7 20344115 20348940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g02467 3 364 EF-hand Containing Proteins AT4G38810 67.663 7.95e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g02467 - - gmx:100820516 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02467 7 20344115 20348940 Trre7g02467 7 20344115 20348940 ECH